CircRNA Information

General Information
circRNA Basic Information
CircID chr4:24537596|24537790
Strand +
CircType exon
Host Gene ENSG00000109606.11;
Algorism CIRI2;
Sequence CTTCCACCACTACTGCTATCATCCAAACCCAAGAATTCTTGATATTTTTATGTTTACATATGCTTCTGCTCACCGGTGCTAATAGTGATACCCACCAGTTGGTAATAGCCACAGTATTAGGGAAAAAATTCTGATAGAAACATGGCAGTAGACTGGTTTCAAAGTTGTTGTTAGCTCTGCAGTGGGCAAGCATAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:24537596|24537790 hsa-miR-29a-5p 0 0 1
chr4:24537596|24537790 hsa-miR-29a-3p 0 0 1
chr4:24537596|24537790 hsa-miR-30a-5p 0 0 1
chr4:24537596|24537790 hsa-miR-30a-3p 0 0 1
chr4:24537596|24537790 hsa-miR-30d-5p 0 0 1
chr4:24537596|24537790 hsa-miR-30d-3p 0 0 1
chr4:24537596|24537790 hsa-miR-200b-5p 0 0 1
chr4:24537596|24537790 hsa-miR-200b-3p 0 0 1
chr4:24537596|24537790 hsa-miR-30b-5p 0 0 1
chr4:24537596|24537790 hsa-miR-30b-3p 0 0 1
chr4:24537596|24537790 hsa-miR-200c-5p 0 0 1
chr4:24537596|24537790 hsa-miR-200c-3p 0 0 1
chr4:24537596|24537790 hsa-miR-29c-5p 0 0 1
chr4:24537596|24537790 hsa-miR-29c-3p 0 0 1
chr4:24537596|24537790 hsa-miR-30e-5p 0 0 1
chr4:24537596|24537790 hsa-miR-30e-3p 0 0 1
chr4:24537596|24537790 hsa-miR-380-5p 0 0 1
chr4:24537596|24537790 hsa-miR-380-3p 0 0 1
chr4:24537596|24537790 hsa-miR-429 0 0 1
chr4:24537596|24537790 hsa-miR-610 0 0 1
chr4:24537596|24537790 hsa-miR-629-5p 0 0 1
chr4:24537596|24537790 hsa-miR-629-3p 0 0 1
chr4:24537596|24537790 hsa-miR-635 0 0 1
chr4:24537596|24537790 hsa-miR-298 0 0 1
chr4:24537596|24537790 hsa-miR-892a 0 0 1
chr4:24537596|24537790 hsa-miR-541-5p 0 0 1
chr4:24537596|24537790 hsa-miR-541-3p 0 0 1
chr4:24537596|24537790 hsa-miR-934 0 0 1
chr4:24537596|24537790 hsa-miR-1255a 0 0 1
chr4:24537596|24537790 hsa-miR-140-5p 0 0 1
chr4:24537596|24537790 hsa-miR-361-5p 0 0 1
chr4:24537596|24537790 hsa-miR-654-5p 1 0 1
chr4:24537596|24537790 hsa-miR-34c-3p 0 0 1
chr4:24537596|24537790 hsa-miR-199b-3p 0 0 1
chr4:24537596|24537790 hsa-miR-199a-3p 0 0 1
chr4:24537596|24537790 hsa-miR-509-3-5p 0 0 1
chr4:24537596|24537790 hsa-miR-509-5p 0 0 1
chr4:24537596|24537790 hsa-miR-582-3p 0 0 1
chr4:24537596|24537790 hsa-miR-548c-3p 0 0 1
chr4:24537596|24537790 hsa-miR-556-3p 0 0 1
chr4:24537596|24537790 hsa-miR-1255b 0 0 1
chr4:24537596|24537790 hsa-miR-30c 0 0 1
chr4:24537596|24537790 hsa-miR-29b 0 0 1
chr4:24537596|24537790 hsa-miR-4468 1 0 0
chr4:24537596|24537790 hsa-miR-3682-3p 1 0 0
chr4:24537596|24537790 hsa-miR-7108-5p 1 0 0
chr4:24537596|24537790 hsa-miR-24-1-5p 1 0 0
chr4:24537596|24537790 hsa-miR-6769b-5p 1 0 0
chr4:24537596|24537790 hsa-miR-6769a-5p 1 0 0
chr4:24537596|24537790 hsa-miR-4701-3p 1 0 0
chr4:24537596|24537790 hsa-miR-6735-5p 1 0 0
chr4:24537596|24537790 hsa-miR-1910-3p 1 0 0
chr4:24537596|24537790 hsa-miR-6736-5p 1 0 0
chr4:24537596|24537790 hsa-miR-6855-5p 1 0 0
chr4:24537596|24537790 hsa-miR-324-3p 1 0 0
chr4:24537596|24537790 hsa-miR-4667-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:24537596|24537790
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MIFLCLHMLLLTGANSDTHQLVIATVLGKKF
Nucleotide Sequence TTGATATTTTTATGTTTACATATGCTTCTGCTCACCGGTGCTAATAGTGATACCCACCAGTTGGTAATAGCCACAGTATTAGGGAAAAAATTCTGA
CircID chr4:24537596|24537790
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MPTAELTTTLKPVYCHVSIRIFSLILWLLPTGGYHY
Nucleotide Sequence TTGCCCACTGCAGAGCTAACAACAACTTTGAAACCAGTCTACTGCCATGTTTCTATCAGAATTTTTTCCCTAATACTGTGGCTATTACCAACTGGTGGGTATCACTATTAG
CircID chr4:24537596|24537790
ORF Type ORF3
Protein Length 64
Nucleotide Length 192
Protein Sequence MLAHCRANNNFETSLLPCFYQNFFPNTVAITNWWVSLLAPVSRSICKHKNIKNSWVWMIAVVVE
Nucleotide Sequence ATGCTTGCCCACTGCAGAGCTAACAACAACTTTGAAACCAGTCTACTGCCATGTTTCTATCAGAATTTTTTCCCTAATACTGTGGCTATTACCAACTGGTGGGTATCACTATTAGCACCGGTGAGCAGAAGCATATGTAAACATAAAAATATCAAGAATTCTTGGGTTTGGATGATAGCAGTAGTGGTGGAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab