CircRNA Information

General Information
circRNA Basic Information
CircID chr4:25377322|25377556
Strand +
CircType exon
Host Gene ENSG00000053900.9;
Algorism CIRI2;
Sequence CTCGCCAGCTGTGTTGGCCAAAGCAATGAGATCCCGCTTGGGCGACCAGACCAGGAAAATAATCTCCTGCGGGAGCTGCTTCTCTCCCACCACCCGGAAGGATGGGAAACAGGTCGGAAAACGCAACATGGGGACGGCCCTGCAACGACACCCCAGTCAGAGGCCGGCAGGAGCCCCCGGCTCTCCACGAGGAGCCCCGACCGCGCCTGTACCTGCAAGAGTCCCCACCGGCAGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:25377322|25377556 hsa-miR-185-5p 0 0 1
chr4:25377322|25377556 hsa-miR-185-3p 0 0 1
chr4:25377322|25377556 hsa-miR-345-5p 0 0 1
chr4:25377322|25377556 hsa-miR-345-3p 0 0 1
chr4:25377322|25377556 hsa-miR-588 0 0 1
chr4:25377322|25377556 hsa-miR-608 1 1 1
chr4:25377322|25377556 hsa-miR-646 0 1 1
chr4:25377322|25377556 hsa-miR-657 0 0 1
chr4:25377322|25377556 hsa-miR-541-5p 0 0 1
chr4:25377322|25377556 hsa-miR-541-3p 0 0 1
chr4:25377322|25377556 hsa-miR-1293 0 1 1
chr4:25377322|25377556 hsa-miR-491-5p 0 1 1
chr4:25377322|25377556 hsa-miR-654-5p 0 0 1
chr4:25377322|25377556 hsa-miR-1207-3p 0 0 1
chr4:25377322|25377556 hsa-miR-342-5p 0 0 1
chr4:25377322|25377556 hsa-miR-637 1 1 0
chr4:25377322|25377556 hsa-miR-762 1 0 0
chr4:25377322|25377556 hsa-miR-1469 1 0 0
chr4:25377322|25377556 hsa-miR-1976 0 1 0
chr4:25377322|25377556 hsa-miR-4306 0 1 0
chr4:25377322|25377556 hsa-miR-3665 1 1 0
chr4:25377322|25377556 hsa-miR-4463 1 0 0
chr4:25377322|25377556 hsa-miR-4466 1 0 0
chr4:25377322|25377556 hsa-miR-4634 1 0 0
chr4:25377322|25377556 hsa-miR-4660 0 1 0
chr4:25377322|25377556 hsa-miR-8085 0 1 0
chr4:25377322|25377556 hsa-miR-8089 1 0 0
chr4:25377322|25377556 hsa-miR-150-3p 1 0 0
chr4:25377322|25377556 hsa-miR-92a-2-5p 1 1 0
chr4:25377322|25377556 hsa-miR-6857-5p 1 0 0
chr4:25377322|25377556 hsa-miR-3692-5p 1 0 0
chr4:25377322|25377556 hsa-miR-139-3p 1 0 0
chr4:25377322|25377556 hsa-miR-4722-5p 0 1 0
chr4:25377322|25377556 hsa-miR-6727-5p 1 0 0
chr4:25377322|25377556 hsa-miR-3663-5p 0 1 0
chr4:25377322|25377556 hsa-miR-6821-5p 1 0 0
chr4:25377322|25377556 hsa-miR-6786-5p 1 0 0
chr4:25377322|25377556 hsa-miR-30c-2-3p 0 1 0
chr4:25377322|25377556 hsa-miR-1908-5p 1 0 0
chr4:25377322|25377556 hsa-miR-4690-5p 1 0 0
chr4:25377322|25377556 hsa-miR-6789-5p 1 0 0
chr4:25377322|25377556 hsa-miR-593-3p 1 1 0
chr4:25377322|25377556 hsa-miR-4763-3p 1 0 0
chr4:25377322|25377556 hsa-miR-6778-5p 0 1 0
chr4:25377322|25377556 hsa-miR-6775-5p 1 0 0
chr4:25377322|25377556 hsa-miR-6756-5p 1 0 0
chr4:25377322|25377556 hsa-miR-7107-5p 1 0 0
chr4:25377322|25377556 hsa-miR-6780a-5p 1 1 0
chr4:25377322|25377556 hsa-miR-6788-5p 0 1 0
chr4:25377322|25377556 hsa-miR-10396a-5p 1 0 0
chr4:25377322|25377556 hsa-miR-10396b-5p 1 0 0
chr4:25377322|25377556 hsa-miR-1909-3p 1 0 0
chr4:25377322|25377556 hsa-miR-4649-5p 1 0 0
chr4:25377322|25377556 hsa-miR-4749-5p 1 0 0
chr4:25377322|25377556 hsa-miR-675-5p 1 0 0
chr4:25377322|25377556 hsa-miR-6846-5p 1 0 0
chr4:25377322|25377556 hsa-miR-6848-5p 1 0 0
chr4:25377322|25377556 hsa-miR-939-5p 1 0 0
chr4:25377322|25377556 hsa-miR-4758-5p 1 0 0
chr4:25377322|25377556 hsa-miR-365a-5p 1 1 0
chr4:25377322|25377556 hsa-miR-30c-1-3p 0 1 0
chr4:25377322|25377556 hsa-miR-7151-3p 1 1 0
chr4:25377322|25377556 hsa-miR-4757-5p 0 1 0
chr4:25377322|25377556 hsa-miR-10400-3p 1 0 0
chr4:25377322|25377556 hsa-miR-1912-5p 0 1 0
chr4:25377322|25377556 hsa-miR-301b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:25377322|25377556
ORF Type ORF1
Protein Length 56
Nucleotide Length 168
Protein Sequence MRELLLSHHPEGWETGRKTQHGDGPATTPQSEAGRSPRLSTRSPDRACTCKSPHRQ
Nucleotide Sequence CTGCGGGAGCTGCTTCTCTCCCACCACCCGGAAGGATGGGAAACAGGTCGGAAAACGCAACATGGGGACGGCCCTGCAACGACACCCCAGTCAGAGGCCGGCAGGAGCCCCCGGCTCTCCACGAGGAGCCCCGACCGCGCCTGTACCTGCAAGAGTCCCCACCGGCAG
CircID chr4:25377322|25377556
ORF Type ORF2
Protein Length 74
Nucleotide Length 222
Protein Sequence MAKAMRSRLGDQTRKIISCGSCFSPTTRKDGKQVGKRNMGTALQRHPSQRPAGAPGSPRGAPTAPVPARVPTGR
Nucleotide Sequence TTGGCCAAAGCAATGAGATCCCGCTTGGGCGACCAGACCAGGAAAATAATCTCCTGCGGGAGCTGCTTCTCTCCCACCACCCGGAAGGATGGGAAACAGGTCGGAAAACGCAACATGGGGACGGCCCTGCAACGACACCCCAGTCAGAGGCCGGCAGGAGCCCCCGGCTCTCCACGAGGAGCCCCGACCGCGCCTGTACCTGCAAGAGTCCCCACCGGCAGA
CircID chr4:25377322|25377556
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MGNRSENATWGRPCNDTPVRGRQEPPALHEEPRPRLYLQESPPA
Nucleotide Sequence ATGGGAAACAGGTCGGAAAACGCAACATGGGGACGGCCCTGCAACGACACCCCAGTCAGAGGCCGGCAGGAGCCCCCGGCTCTCCACGAGGAGCCCCGACCGCGCCTGTACCTGCAAGAGTCCCCACCGGCA
CircID chr4:25377322|25377556
ORF Type ORF4
Protein Length 53
Nucleotide Length 159
Protein Sequence MTGVSLQGRPHVAFSDLFPILPGGGREAAPAGDYFPGLVAQAGSHCFGQHSWR
Nucleotide Sequence CTGACTGGGGTGTCGTTGCAGGGCCGTCCCCATGTTGCGTTTTCCGACCTGTTTCCCATCCTTCCGGGTGGTGGGAGAGAAGCAGCTCCCGCAGGAGATTATTTTCCTGGTCTGGTCGCCCAAGCGGGATCTCATTGCTTTGGCCAACACAGCTGGCGA
CircID chr4:25377322|25377556
ORF Type ORF5
Protein Length 25
Nucleotide Length 78
Protein Sequence LPVGTLAGTGAVGAPRGEPGAPAGL
Nucleotide Sequence CTGCCGGTGGGGACTCTTGCAGGTACAGGCGCGGTCGGGGCTCCTCGTGGAGAGCCGGGGGCTCCTGCCGGCCTCTGA
CircID chr4:25377322|25377556
ORF Type ORF6
Protein Length 52
Nucleotide Length 156
Protein Sequence MGCRCRAVPMLRFPTCFPSFRVVGEKQLPQEIIFLVWSPKRDLIALANTAGE
Nucleotide Sequence CTGGGGTGTCGTTGCAGGGCCGTCCCCATGTTGCGTTTTCCGACCTGTTTCCCATCCTTCCGGGTGGTGGGAGAGAAGCAGCTCCCGCAGGAGATTATTTTCCTGGTCTGGTCGCCCAAGCGGGATCTCATTGCTTTGGCCAACACAGCTGGCGAG
CircID chr4:25377322|25377556
ORF Type ORF7
Protein Length 72
Nucleotide Length 216
Protein Sequence MQVQARSGLLVESRGLLPASDWGVVAGPSPCCVFRPVSHPSGWWERSSSRRRLFSWSGRPSGISLLWPTQLA
Nucleotide Sequence TTGCAGGTACAGGCGCGGTCGGGGCTCCTCGTGGAGAGCCGGGGGCTCCTGCCGGCCTCTGACTGGGGTGTCGTTGCAGGGCCGTCCCCATGTTGCGTTTTCCGACCTGTTTCCCATCCTTCCGGGTGGTGGGAGAGAAGCAGCTCCCGCAGGAGATTATTTTCCTGGTCTGGTCGCCCAAGCGGGATCTCATTGCTTTGGCCAACACAGCTGGCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab