CircRNA Information

General Information
circRNA Basic Information
CircID chr4:25674390|25674589
Strand -
CircType exon
Host Gene ENSG00000157765.10;
Algorism CIRI2;
Sequence GTCGGCCTTGACCCCCCTGATTGGTGAGTTACACCCTGGCTTCTCCCTCTGGCCACCACTGCCATTTCCTGTCATCCCATGGGGCTGATATGTTTGTGTTTTGTGTTTCCCCCAGGAATCGGCGTGATAACCATTGAGAGGGCTTATCCACTCACGCTGGGCTCCAACATCGGCACCACCACCACCGCCATCCTGGCCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:25674390|25674589 hsa-miR-34a-5p 0 0 1
chr4:25674390|25674589 hsa-miR-34a-3p 0 0 1
chr4:25674390|25674589 hsa-miR-449a 0 0 1
chr4:25674390|25674589 hsa-miR-625-5p 0 0 1
chr4:25674390|25674589 hsa-miR-625-3p 0 0 1
chr4:25674390|25674589 hsa-miR-637 0 0 1
chr4:25674390|25674589 hsa-miR-449b-5p 0 0 1
chr4:25674390|25674589 hsa-miR-449b-3p 0 0 1
chr4:25674390|25674589 hsa-miR-1261 0 0 1
chr4:25674390|25674589 hsa-miR-1275 0 0 1
chr4:25674390|25674589 hsa-miR-876-3p 0 0 1
chr4:25674390|25674589 hsa-miR-34c-5p 0 0 1
chr4:25674390|25674589 hsa-miR-323-5p 0 0 1
chr4:25674390|25674589 hsa-miR-608 1 0 0
chr4:25674390|25674589 hsa-miR-638 1 0 0
chr4:25674390|25674589 hsa-miR-3132 1 0 0
chr4:25674390|25674589 hsa-miR-4270 1 0 0
chr4:25674390|25674589 hsa-miR-4462 1 0 0
chr4:25674390|25674589 hsa-miR-2392 1 1 0
chr4:25674390|25674589 hsa-miR-4510 0 1 0
chr4:25674390|25674589 hsa-miR-4739 1 0 0
chr4:25674390|25674589 hsa-miR-5093 0 1 0
chr4:25674390|25674589 hsa-miR-5698 1 0 0
chr4:25674390|25674589 hsa-miR-5703 0 1 0
chr4:25674390|25674589 hsa-miR-6127 1 1 0
chr4:25674390|25674589 hsa-miR-6129 1 1 0
chr4:25674390|25674589 hsa-miR-6133 1 1 0
chr4:25674390|25674589 hsa-miR-12124 0 1 0
chr4:25674390|25674589 hsa-miR-4435 1 1 0
chr4:25674390|25674589 hsa-miR-3150a-3p 1 0 0
chr4:25674390|25674589 hsa-miR-6728-5p 1 1 0
chr4:25674390|25674589 hsa-miR-5187-5p 1 1 0
chr4:25674390|25674589 hsa-miR-6089 1 0 0
chr4:25674390|25674589 hsa-miR-6873-5p 0 1 0
chr4:25674390|25674589 hsa-miR-6744-5p 1 1 0
chr4:25674390|25674589 hsa-miR-6746-5p 1 0 0
chr4:25674390|25674589 hsa-miR-4722-5p 1 0 0
chr4:25674390|25674589 hsa-miR-145-3p 0 1 0
chr4:25674390|25674589 hsa-miR-6732-5p 1 0 0
chr4:25674390|25674589 hsa-miR-23a-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6798-5p 1 1 0
chr4:25674390|25674589 hsa-miR-6760-5p 0 1 0
chr4:25674390|25674589 hsa-miR-5006-5p 1 0 0
chr4:25674390|25674589 hsa-miR-1343-3p 0 1 0
chr4:25674390|25674589 hsa-miR-6786-5p 1 0 0
chr4:25674390|25674589 hsa-miR-4786-3p 1 0 0
chr4:25674390|25674589 hsa-miR-4640-5p 1 1 0
chr4:25674390|25674589 hsa-miR-4743-5p 1 0 0
chr4:25674390|25674589 hsa-miR-4781-3p 0 1 0
chr4:25674390|25674589 hsa-miR-6781-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6878-5p 0 1 0
chr4:25674390|25674589 hsa-miR-5010-5p 1 0 0
chr4:25674390|25674589 hsa-miR-1225-5p 1 0 0
chr4:25674390|25674589 hsa-miR-3681-5p 0 1 0
chr4:25674390|25674589 hsa-miR-10400-5p 1 0 0
chr4:25674390|25674589 hsa-miR-4763-3p 1 0 0
chr4:25674390|25674589 hsa-miR-6778-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6812-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6870-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6743-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6752-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6756-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6769a-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6803-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6819-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6851-5p 1 0 0
chr4:25674390|25674589 hsa-miR-1249-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6751-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6879-5p 1 0 0
chr4:25674390|25674589 hsa-miR-7111-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6780b-5p 1 0 0
chr4:25674390|25674589 hsa-miR-4685-5p 1 0 0
chr4:25674390|25674589 hsa-miR-4726-5p 1 0 0
chr4:25674390|25674589 hsa-miR-675-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6794-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6795-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6887-5p 1 0 0
chr4:25674390|25674589 hsa-miR-4723-5p 1 1 0
chr4:25674390|25674589 hsa-miR-6885-5p 1 0 0
chr4:25674390|25674589 hsa-miR-1238-5p 1 1 0
chr4:25674390|25674589 hsa-miR-6511a-5p 1 0 0
chr4:25674390|25674589 hsa-miR-3085-5p 1 0 0
chr4:25674390|25674589 hsa-miR-3198 0 1 0
chr4:25674390|25674589 hsa-miR-4665-5p 1 1 0
chr4:25674390|25674589 hsa-miR-6785-5p 1 0 0
chr4:25674390|25674589 hsa-miR-6849-5p 0 1 0
chr4:25674390|25674589 hsa-miR-487b-5p 0 1 0
chr4:25674390|25674589 hsa-miR-487a-5p 0 1 0
chr4:25674390|25674589 hsa-miR-147b-5p 0 1 0
chr4:25674390|25674589 hsa-miR-376b-5p 0 1 0
chr4:25674390|25674589 hsa-miR-376c-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:25674390|25674589
ORF Type ORF1
Protein Length 50
Nucleotide Length 150
Protein Sequence MATTAISCHPMGLICLCFVFPPGIGVITIERAYPLTLGSNIGTTTTAILA
Nucleotide Sequence CTGGCCACCACTGCCATTTCCTGTCATCCCATGGGGCTGATATGTTTGTGTTTTGTGTTTCCCCCAGGAATCGGCGTGATAACCATTGAGAGGGCTTATCCACTCACGCTGGGCTCCAACATCGGCACCACCACCACCGCCATCCTGGCC
CircID chr4:25674390|25674589
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MTPLIGELHPGFSLWPPLPFPVIPWG
Nucleotide Sequence TTGACCCCCCTGATTGGTGAGTTACACCCTGGCTTCTCCCTCTGGCCACCACTGCCATTTCCTGTCATCCCATGGGGCTGA
CircID chr4:25674390|25674589
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MVSYTLASPSGHHCHFLSSHGADMFVFCVSPRNRRDNH
Nucleotide Sequence TTGGTGAGTTACACCCTGGCTTCTCCCTCTGGCCACCACTGCCATTTCCTGTCATCCCATGGGGCTGATATGTTTGTGTTTTGTGTTTCCCCCAGGAATCGGCGTGATAACCATTGA
CircID chr4:25674390|25674589
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MGETQNTNISAPWDDRKWQWWPEGEARV
Nucleotide Sequence CTGGGGGAAACACAAAACACAAACATATCAGCCCCATGGGATGACAGGAAATGGCAGTGGTGGCCAGAGGGAGAAGCCAGGGTGTAA
CircID chr4:25674390|25674589
ORF Type ORF5
Protein Length 25
Nucleotide Length 75
Protein Sequence MTGNGSGGQREKPGCNSPIRGVKAD
Nucleotide Sequence ATGACAGGAAATGGCAGTGGTGGCCAGAGGGAGAAGCCAGGGTGTAACTCACCAATCAGGGGGGTCAAGGCCGAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab