CircRNA Information

General Information
circRNA Basic Information
CircID chr4:25676668|25676987
Strand -
CircType exon
Host Gene ENSG00000157765.10;
Algorism CIRI2;
Sequence CTTTGATAACATAACCATTAGCAGAGAGGCTCAGGGTGAGGTCCCTGCCTCGGACTCAAAGACCGAATGCACGGCCTTGTAGGGGACGCCCCAGATTGTCAGGGATGGGGGGATGGTCCTTGAGTTTTGCATGCTCTCCTCCCTCCCACTTCTGCACCCTTTCACCACCTCGAGGAGATTTGCTCCCCATTAGCGAATGAAATTGATGCAGTCCTACCTAACTCGATTCCCTTTGGCTTGGTGGTAGGCCTGCAGGGCACTTTTATTCCAACCCCTGGTCACTCAGTAATCTTTTACTCCAGGAAGGCACAGGATGGTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:25676668|25676987 hsa-miR-17-5p 0 0 1
chr4:25676668|25676987 hsa-miR-17-3p 0 0 1
chr4:25676668|25676987 hsa-miR-20a-5p 0 0 1
chr4:25676668|25676987 hsa-miR-20a-3p 0 0 1
chr4:25676668|25676987 hsa-miR-93-5p 0 0 1
chr4:25676668|25676987 hsa-miR-93-3p 0 0 1
chr4:25676668|25676987 hsa-miR-106a-5p 0 0 1
chr4:25676668|25676987 hsa-miR-106a-3p 0 0 1
chr4:25676668|25676987 hsa-miR-217-5p 0 0 1
chr4:25676668|25676987 hsa-miR-217-3p 0 0 1
chr4:25676668|25676987 hsa-miR-106b-5p 0 0 1
chr4:25676668|25676987 hsa-miR-106b-3p 0 0 1
chr4:25676668|25676987 hsa-miR-196b-5p 0 0 1
chr4:25676668|25676987 hsa-miR-196b-3p 0 0 1
chr4:25676668|25676987 hsa-miR-20b-5p 0 0 1
chr4:25676668|25676987 hsa-miR-20b-3p 0 0 1
chr4:25676668|25676987 hsa-miR-488-5p 0 0 1
chr4:25676668|25676987 hsa-miR-488-3p 0 0 1
chr4:25676668|25676987 hsa-miR-519d-5p 0 0 1
chr4:25676668|25676987 hsa-miR-519d-3p 0 0 1
chr4:25676668|25676987 hsa-miR-517-5p 0 0 1
chr4:25676668|25676987 hsa-miR-517b-3p 0 0 1
chr4:25676668|25676987 hsa-miR-624-5p 0 0 1
chr4:25676668|25676987 hsa-miR-624-3p 0 0 1
chr4:25676668|25676987 hsa-miR-627-5p 0 0 1
chr4:25676668|25676987 hsa-miR-627-3p 0 0 1
chr4:25676668|25676987 hsa-miR-637 0 0 1
chr4:25676668|25676987 hsa-miR-1323 0 1 1
chr4:25676668|25676987 hsa-miR-1298-5p 0 0 1
chr4:25676668|25676987 hsa-miR-1298-3p 0 0 1
chr4:25676668|25676987 hsa-miR-765 0 0 1
chr4:25676668|25676987 hsa-miR-298 1 1 1
chr4:25676668|25676987 hsa-miR-874-5p 0 0 1
chr4:25676668|25676987 hsa-miR-874-3p 0 0 1
chr4:25676668|25676987 hsa-miR-939-5p 0 0 1
chr4:25676668|25676987 hsa-miR-939-3p 0 0 1
chr4:25676668|25676987 hsa-miR-940 0 1 1
chr4:25676668|25676987 hsa-miR-1205 0 0 1
chr4:25676668|25676987 hsa-miR-548n 0 0 1
chr4:25676668|25676987 hsa-miR-548o-3p 0 0 1
chr4:25676668|25676987 hsa-miR-1288-5p 0 0 1
chr4:25676668|25676987 hsa-miR-1288-3p 0 0 1
chr4:25676668|25676987 hsa-miR-1321 0 1 1
chr4:25676668|25676987 hsa-miR-1827 0 0 1
chr4:25676668|25676987 hsa-miR-548o 0 0 1
chr4:25676668|25676987 hsa-miR-146b-3p 0 0 1
chr4:25676668|25676987 hsa-miR-331-5p 0 0 1
chr4:25676668|25676987 hsa-miR-1207-5p 0 0 1
chr4:25676668|25676987 hsa-miR-125a-5p 0 1 1
chr4:25676668|25676987 hsa-miR-125b 0 0 1
chr4:25676668|25676987 hsa-miR-550 0 0 1
chr4:25676668|25676987 hsa-miR-196a 0 0 1
chr4:25676668|25676987 hsa-miR-608 1 0 0
chr4:25676668|25676987 hsa-miR-612 1 0 0
chr4:25676668|25676987 hsa-miR-638 1 0 0
chr4:25676668|25676987 hsa-miR-762 1 0 0
chr4:25676668|25676987 hsa-miR-1200 1 1 0
chr4:25676668|25676987 hsa-miR-4297 0 1 0
chr4:25676668|25676987 hsa-miR-4292 1 0 0
chr4:25676668|25676987 hsa-miR-3909 1 1 0
chr4:25676668|25676987 hsa-miR-4510 0 1 0
chr4:25676668|25676987 hsa-miR-4651 1 0 0
chr4:25676668|25676987 hsa-miR-4739 1 1 0
chr4:25676668|25676987 hsa-miR-6129 0 1 0
chr4:25676668|25676987 hsa-miR-6130 0 1 0
chr4:25676668|25676987 hsa-miR-6133 0 1 0
chr4:25676668|25676987 hsa-miR-6134 1 1 0
chr4:25676668|25676987 hsa-miR-7974 1 0 0
chr4:25676668|25676987 hsa-miR-8073 1 0 0
chr4:25676668|25676987 hsa-miR-4433b-3p 1 1 0
chr4:25676668|25676987 hsa-miR-4433a-3p 1 1 0
chr4:25676668|25676987 hsa-miR-6765-5p 1 0 0
chr4:25676668|25676987 hsa-miR-3150a-3p 1 1 0
chr4:25676668|25676987 hsa-miR-7106-5p 0 1 0
chr4:25676668|25676987 hsa-miR-6894-5p 1 0 0
chr4:25676668|25676987 hsa-miR-6833-5p 1 0 0
chr4:25676668|25676987 hsa-miR-1236-5p 0 1 0
chr4:25676668|25676987 hsa-miR-6089 1 0 0
chr4:25676668|25676987 hsa-miR-4653-3p 0 1 0
chr4:25676668|25676987 hsa-miR-3677-5p 1 0 0
chr4:25676668|25676987 hsa-miR-432-5p 1 1 0
chr4:25676668|25676987 hsa-miR-6772-5p 1 0 0
chr4:25676668|25676987 hsa-miR-6782-5p 1 0 0
chr4:25676668|25676987 hsa-miR-3150b-3p 0 1 0
chr4:25676668|25676987 hsa-miR-6852-5p 1 0 0
chr4:25676668|25676987 hsa-miR-7109-5p 1 1 0
chr4:25676668|25676987 hsa-miR-1226-5p 1 0 0
chr4:25676668|25676987 hsa-miR-6753-5p 1 0 0
chr4:25676668|25676987 hsa-miR-3202 0 1 0
chr4:25676668|25676987 hsa-miR-7854-3p 1 0 0
chr4:25676668|25676987 hsa-miR-659-5p 0 1 0
chr4:25676668|25676987 hsa-miR-149-3p 1 1 0
chr4:25676668|25676987 hsa-miR-6789-5p 1 0 0
chr4:25676668|25676987 hsa-miR-550b-2-5p 0 1 0
chr4:25676668|25676987 hsa-miR-3619-3p 0 1 0
chr4:25676668|25676987 hsa-miR-3173-5p 0 1 0
chr4:25676668|25676987 hsa-miR-670-5p 0 1 0
chr4:25676668|25676987 hsa-miR-6729-3p 0 1 0
chr4:25676668|25676987 hsa-miR-6505-5p 0 1 0
chr4:25676668|25676987 hsa-miR-431-3p 1 0 0
chr4:25676668|25676987 hsa-miR-1233-5p 1 1 0
chr4:25676668|25676987 hsa-miR-4763-3p 1 1 0
chr4:25676668|25676987 hsa-miR-6769b-5p 1 0 0
chr4:25676668|25676987 hsa-miR-6778-5p 1 1 0
chr4:25676668|25676987 hsa-miR-6865-5p 1 0 0
chr4:25676668|25676987 hsa-miR-1343-5p 1 1 0
chr4:25676668|25676987 hsa-miR-6743-5p 1 0 0
chr4:25676668|25676987 hsa-miR-6756-5p 1 0 0
chr4:25676668|25676987 hsa-miR-6803-5p 1 0 0
chr4:25676668|25676987 hsa-miR-6851-5p 1 0 0
chr4:25676668|25676987 hsa-miR-1249-5p 1 1 0
chr4:25676668|25676987 hsa-miR-6779-5p 0 1 0
chr4:25676668|25676987 hsa-miR-6780a-5p 1 1 0
chr4:25676668|25676987 hsa-miR-6797-5p 1 1 0
chr4:25676668|25676987 hsa-miR-6808-5p 0 1 0
chr4:25676668|25676987 hsa-miR-6754-3p 1 0 0
chr4:25676668|25676987 hsa-miR-4728-5p 1 1 0
chr4:25676668|25676987 hsa-miR-10526-3p 0 1 0
chr4:25676668|25676987 hsa-miR-328-5p 1 0 0
chr4:25676668|25676987 hsa-miR-3689a-3p 0 1 0
chr4:25676668|25676987 hsa-miR-6795-5p 0 1 0
chr4:25676668|25676987 hsa-miR-6883-5p 0 1 0
chr4:25676668|25676987 hsa-miR-4769-5p 1 0 0
chr4:25676668|25676987 hsa-miR-6799-3p 0 1 0
chr4:25676668|25676987 hsa-miR-498-5p 1 0 0
chr4:25676668|25676987 hsa-miR-6750-5p 1 0 0
chr4:25676668|25676987 hsa-miR-6785-5p 0 1 0
chr4:25676668|25676987 hsa-miR-3184-5p 1 0 0
chr4:25676668|25676987 hsa-miR-6791-5p 1 0 0
chr4:25676668|25676987 hsa-miR-550a-3-5p 1 0 0
chr4:25676668|25676987 hsa-miR-550a-5p 1 0 0
chr4:25676668|25676987 hsa-miR-6862-3p 1 1 0
chr4:25676668|25676987 hsa-miR-6837-5p 1 0 0
chr4:25676668|25676987 hsa-miR-6529-3p 0 1 0
chr4:25676668|25676987 hsa-miR-6751-3p 1 1 0
chr4:25676668|25676987 hsa-miR-6823-3p 0 1 0
chr4:25676668|25676987 hsa-miR-5581-5p 0 1 0
chr4:25676668|25676987 hsa-miR-10394-5p 0 1 0
chr4:25676668|25676987 hsa-miR-6811-5p 0 1 0
chr4:25676668|25676987 hsa-miR-517c-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:25676668|25676987
ORF Type ORF1
Protein Length 64
Nucleotide Length 192
Protein Sequence MHALLPPTSAPFHHLEEICSPLANEIDAVLPNSIPFGLVVGLQGTFIPTPGHSVIFYSRKAQDG
Nucleotide Sequence TTGCATGCTCTCCTCCCTCCCACTTCTGCACCCTTTCACCACCTCGAGGAGATTTGCTCCCCATTAGCGAATGAAATTGATGCAGTCCTACCTAACTCGATTCCCTTTGGCTTGGTGGTAGGCCTGCAGGGCACTTTTATTCCAACCCCTGGTCACTCAGTAATCTTTTACTCCAGGAAGGCACAGGATGGT
CircID chr4:25676668|25676987
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MVLEFCMLSSLPLLHPFTTSRRFAPH
Nucleotide Sequence ATGGTCCTTGAGTTTTGCATGCTCTCCTCCCTCCCACTTCTGCACCCTTTCACCACCTCGAGGAGATTTGCTCCCCATTAG
CircID chr4:25676668|25676987
ORF Type ORF3
Protein Length 51
Nucleotide Length 156
Protein Sequence MPRTQRPNARPCRGRPRLSGMGGWSLSFACSPPSHFCTLSPPRGDLLPISE
Nucleotide Sequence CTGCCTCGGACTCAAAGACCGAATGCACGGCCTTGTAGGGGACGCCCCAGATTGTCAGGGATGGGGGGATGGTCCTTGAGTTTTGCATGCTCTCCTCCCTCCCACTTCTGCACCCTTTCACCACCTCGAGGAGATTTGCTCCCCATTAGCGAATGA
CircID chr4:25676668|25676987
ORF Type ORF4
Protein Length 51
Nucleotide Length 156
Protein Sequence MHQFHSLMGSKSPRGGERVQKWEGGEHAKLKDHPPIPDNLGRPLQGRAFGL
Nucleotide Sequence CTGCATCAATTTCATTCGCTAATGGGGAGCAAATCTCCTCGAGGTGGTGAAAGGGTGCAGAAGTGGGAGGGAGGAGAGCATGCAAAACTCAAGGACCATCCCCCCATCCCTGACAATCTGGGGCGTCCCCTACAAGGCCGTGCATTCGGTCTTTGA
CircID chr4:25676668|25676987
ORF Type ORF5
Protein Length 33
Nucleotide Length 102
Protein Sequence MQNSRTIPPSLTIWGVPYKAVHSVFESEAGTSP
Nucleotide Sequence ATGCAAAACTCAAGGACCATCCCCCCATCCCTGACAATCTGGGGCGTCCCCTACAAGGCCGTGCATTCGGTCTTTGAGTCCGAGGCAGGGACCTCACCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab