CircRNA Information

General Information
circRNA Basic Information
CircID chr4:25677111|25677356
Strand +
CircType exon
Host Gene ENSG00000157765.10;
Algorism CIRI2;
Sequence CTGTCCACGTGAGGAAGCCCTGATGGGGAATGTGGGGAGCACTAGGAAGTGGGATAGACCCACACCTTGTGGTCTGCAGTTTCCAAACAATGACACTATGTCCCCTGACCCAGGCTGATCTGGGGCAAGGAGGCCATGGAGCTGCTGCTCTTGGTTGCCAGACTTTGGTTTAAAAAAAGGGAGAGGCCTGAGCTTGATAGTCATAGAGAGTACACTTCCTCATCTGGGAGAGCCTCTCATACATTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:25677111|25677356 hsa-miR-15a-5p 0 0 1
chr4:25677111|25677356 hsa-miR-15a-3p 0 0 1
chr4:25677111|25677356 hsa-miR-204-5p 0 0 1
chr4:25677111|25677356 hsa-miR-204-3p 0 0 1
chr4:25677111|25677356 hsa-miR-211-5p 0 0 1
chr4:25677111|25677356 hsa-miR-211-3p 0 0 1
chr4:25677111|25677356 hsa-miR-15b-5p 0 0 1
chr4:25677111|25677356 hsa-miR-15b-3p 0 0 1
chr4:25677111|25677356 hsa-miR-150-5p 0 0 1
chr4:25677111|25677356 hsa-miR-150-3p 0 0 1
chr4:25677111|25677356 hsa-miR-195-5p 0 0 1
chr4:25677111|25677356 hsa-miR-195-3p 0 0 1
chr4:25677111|25677356 hsa-miR-335-5p 0 0 1
chr4:25677111|25677356 hsa-miR-335-3p 0 0 1
chr4:25677111|25677356 hsa-miR-384 0 0 1
chr4:25677111|25677356 hsa-miR-424-5p 0 0 1
chr4:25677111|25677356 hsa-miR-424-3p 0 0 1
chr4:25677111|25677356 hsa-miR-497-5p 0 0 1
chr4:25677111|25677356 hsa-miR-497-3p 0 0 1
chr4:25677111|25677356 hsa-miR-520f-5p 0 0 1
chr4:25677111|25677356 hsa-miR-520f-3p 0 0 1
chr4:25677111|25677356 hsa-miR-616-5p 0 0 1
chr4:25677111|25677356 hsa-miR-616-3p 0 0 1
chr4:25677111|25677356 hsa-miR-624-5p 0 0 1
chr4:25677111|25677356 hsa-miR-624-3p 0 0 1
chr4:25677111|25677356 hsa-miR-646 0 0 1
chr4:25677111|25677356 hsa-miR-661 0 1 1
chr4:25677111|25677356 hsa-miR-512-3p 0 0 1
chr4:25677111|25677356 hsa-miR-532-3p 0 0 1
chr4:25677111|25677356 hsa-miR-193a-5p 0 0 1
chr4:25677111|25677356 hsa-miR-502-5p 0 0 1
chr4:25677111|25677356 hsa-miR-509-3-5p 0 1 1
chr4:25677111|25677356 hsa-miR-509-5p 0 1 1
chr4:25677111|25677356 hsa-miR-516a-3p 0 0 1
chr4:25677111|25677356 hsa-miR-16 0 0 1
chr4:25677111|25677356 hsa-miR-484 1 1 0
chr4:25677111|25677356 hsa-miR-2278 0 1 0
chr4:25677111|25677356 hsa-miR-4457 0 1 0
chr4:25677111|25677356 hsa-miR-4473 0 1 0
chr4:25677111|25677356 hsa-miR-6079 0 1 0
chr4:25677111|25677356 hsa-miR-7703 1 0 0
chr4:25677111|25677356 hsa-miR-8059 0 1 0
chr4:25677111|25677356 hsa-miR-8089 1 0 0
chr4:25677111|25677356 hsa-miR-6854-5p 0 1 0
chr4:25677111|25677356 hsa-miR-3189-5p 1 0 0
chr4:25677111|25677356 hsa-miR-1915-5p 0 1 0
chr4:25677111|25677356 hsa-miR-2467-5p 0 1 0
chr4:25677111|25677356 hsa-miR-4738-3p 0 1 0
chr4:25677111|25677356 hsa-miR-3127-5p 1 1 0
chr4:25677111|25677356 hsa-miR-6878-3p 0 1 0
chr4:25677111|25677356 hsa-miR-7106-3p 0 1 0
chr4:25677111|25677356 hsa-miR-3158-3p 0 1 0
chr4:25677111|25677356 hsa-miR-6867-3p 0 1 0
chr4:25677111|25677356 hsa-miR-4761-5p 0 1 0
chr4:25677111|25677356 hsa-miR-3156-3p 0 1 0
chr4:25677111|25677356 hsa-miR-4650-5p 0 1 0
chr4:25677111|25677356 hsa-miR-4763-3p 1 0 0
chr4:25677111|25677356 hsa-miR-6775-5p 1 0 0
chr4:25677111|25677356 hsa-miR-6795-5p 1 0 0
chr4:25677111|25677356 hsa-miR-6791-3p 0 1 0
chr4:25677111|25677356 hsa-miR-6848-3p 0 1 0
chr4:25677111|25677356 hsa-miR-6838-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:25677111|25677356
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MIWGKEAMELLLLVARLWFKKRERPELDSHREYTSSSGRASHTF
Nucleotide Sequence CTGATCTGGGGCAAGGAGGCCATGGAGCTGCTGCTCTTGGTTGCCAGACTTTGGTTTAAAAAAAGGGAGAGGCCTGAGCTTGATAGTCATAGAGAGTACACTTCCTCATCTGGGAGAGCCTCTCATACATTC
CircID chr4:25677111|25677356
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MMGNVGSTRKWDRPTPCGLQFPNNDTMSPDPG
Nucleotide Sequence CTGATGGGGAATGTGGGGAGCACTAGGAAGTGGGATAGACCCACACCTTGTGGTCTGCAGTTTCCAAACAATGACACTATGTCCCCTGACCCAGGCTGA
CircID chr4:25677111|25677356
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MPDFGLKKGRGLSLIVIESTLPHLGEPLIH
Nucleotide Sequence TTGCCAGACTTTGGTTTAAAAAAAGGGAGAGGCCTGAGCTTGATAGTCATAGAGAGTACACTTCCTCATCTGGGAGAGCCTCTCATACAT
CircID chr4:25677111|25677356
ORF Type ORF4
Protein Length 47
Nucleotide Length 144
Protein Sequence MWGALGSGIDPHLVVCSFQTMTLCPLTQADLGQGGHGAAALGCQTLV
Nucleotide Sequence ATGTGGGGAGCACTAGGAAGTGGGATAGACCCACACCTTGTGGTCTGCAGTTTCCAAACAATGACACTATGTCCCCTGACCCAGGCTGATCTGGGGCAAGGAGGCCATGGAGCTGCTGCTCTTGGTTGCCAGACTTTGGTTTAA
CircID chr4:25677111|25677356
ORF Type ORF5
Protein Length 68
Nucleotide Length 204
Protein Sequence MTIKLRPLPFFKPKSGNQEQQLHGLLAPDQPGSGDIVSLFGNCRPQGVGLSHFLVLPTFPIRASSRGQ
Nucleotide Sequence ATGACTATCAAGCTCAGGCCTCTCCCTTTTTTTAAACCAAAGTCTGGCAACCAAGAGCAGCAGCTCCATGGCCTCCTTGCCCCAGATCAGCCTGGGTCAGGGGACATAGTGTCATTGTTTGGAAACTGCAGACCACAAGGTGTGGGTCTATCCCACTTCCTAGTGCTCCCCACATTCCCCATCAGGGCTTCCTCACGTGGACAG
CircID chr4:25677111|25677356
ORF Type ORF6
Protein Length 26
Nucleotide Length 78
Protein Sequence MQTTRCGSIPLPSAPHIPHQGFLTWT
Nucleotide Sequence CTGCAGACCACAAGGTGTGGGTCTATCCCACTTCCTAGTGCTCCCCACATTCCCCATCAGGGCTTCCTCACGTGGACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab