CircRNA Information

General Information
circRNA Basic Information
CircID chr4:2930736|2930919
Strand +
CircType exon
Host Gene ENSG00000109736.13;
Algorism CIRI2;
Sequence CACGTGGTCCGGGCTCTTTTTGCTCCCCTTCTTCCTCCTGCAGAAGCTGAGTTACCCGGCACAGACGCTCAAGGCTGAGTAGCTGAGCCACTGTGCCCAGGCTGTGGGCACCAGGCAGAGTGGGAGCCTAGGTCAGGCCCCTGCCCACTGCCTGACCCCCACCCCCCGCCAGTCCAGGGAGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:2930736|2930919 hsa-miR-192-5p 0 0 1
chr4:2930736|2930919 hsa-miR-192-3p 0 0 1
chr4:2930736|2930919 hsa-miR-34a-5p 0 0 1
chr4:2930736|2930919 hsa-miR-34a-3p 0 0 1
chr4:2930736|2930919 hsa-miR-215-5p 0 0 1
chr4:2930736|2930919 hsa-miR-215-3p 0 0 1
chr4:2930736|2930919 hsa-miR-422a 0 0 1
chr4:2930736|2930919 hsa-miR-449a 0 0 1
chr4:2930736|2930919 hsa-miR-510-5p 0 0 1
chr4:2930736|2930919 hsa-miR-510-3p 0 0 1
chr4:2930736|2930919 hsa-miR-608 1 1 1
chr4:2930736|2930919 hsa-miR-612 0 1 1
chr4:2930736|2930919 hsa-miR-645 0 1 1
chr4:2930736|2930919 hsa-miR-661 0 1 1
chr4:2930736|2930919 hsa-miR-449b-5p 0 0 1
chr4:2930736|2930919 hsa-miR-449b-3p 0 0 1
chr4:2930736|2930919 hsa-miR-939-5p 0 0 1
chr4:2930736|2930919 hsa-miR-939-3p 0 0 1
chr4:2930736|2930919 hsa-miR-1205 0 0 1
chr4:2930736|2930919 hsa-miR-1286 1 0 1
chr4:2930736|2930919 hsa-miR-1276 0 1 1
chr4:2930736|2930919 hsa-miR-548p 0 0 1
chr4:2930736|2930919 hsa-miR-1288-5p 0 0 1
chr4:2930736|2930919 hsa-miR-1288-3p 0 0 1
chr4:2930736|2930919 hsa-miR-512-5p 0 1 1
chr4:2930736|2930919 hsa-miR-532-3p 0 0 1
chr4:2930736|2930919 hsa-miR-1184 0 0 1
chr4:2930736|2930919 hsa-miR-1207-5p 0 0 1
chr4:2930736|2930919 hsa-miR-34c-5p 0 0 1
chr4:2930736|2930919 hsa-miR-128 0 0 1
chr4:2930736|2930919 hsa-miR-378 0 0 1
chr4:2930736|2930919 hsa-miR-1269 0 0 1
chr4:2930736|2930919 hsa-miR-1285 0 0 1
chr4:2930736|2930919 hsa-miR-544 0 0 1
chr4:2930736|2930919 hsa-miR-1254 0 0 1
chr4:2930736|2930919 hsa-miR-24 0 0 1
chr4:2930736|2930919 hsa-miR-663 0 0 1
chr4:2930736|2930919 hsa-miR-762 1 0 0
chr4:2930736|2930919 hsa-miR-765 1 0 0
chr4:2930736|2930919 hsa-miR-1183 1 0 0
chr4:2930736|2930919 hsa-miR-2861 0 1 0
chr4:2930736|2930919 hsa-miR-3154 1 1 0
chr4:2930736|2930919 hsa-miR-3185 0 1 0
chr4:2930736|2930919 hsa-miR-3907 0 1 0
chr4:2930736|2930919 hsa-miR-3917 1 0 0
chr4:2930736|2930919 hsa-miR-4498 1 0 0
chr4:2930736|2930919 hsa-miR-4651 1 1 0
chr4:2930736|2930919 hsa-miR-4688 1 0 0
chr4:2930736|2930919 hsa-miR-4692 0 1 0
chr4:2930736|2930919 hsa-miR-4706 1 0 0
chr4:2930736|2930919 hsa-miR-4739 1 0 0
chr4:2930736|2930919 hsa-miR-4741 1 0 0
chr4:2930736|2930919 hsa-miR-5693 0 1 0
chr4:2930736|2930919 hsa-miR-5787 1 0 0
chr4:2930736|2930919 hsa-miR-6090 1 0 0
chr4:2930736|2930919 hsa-miR-6165 1 0 0
chr4:2930736|2930919 hsa-miR-6860 0 1 0
chr4:2930736|2930919 hsa-miR-9985 0 1 0
chr4:2930736|2930919 hsa-miR-6840-3p 1 0 0
chr4:2930736|2930919 hsa-miR-4433a-3p 1 0 0
chr4:2930736|2930919 hsa-miR-6894-5p 1 0 0
chr4:2930736|2930919 hsa-miR-27a-5p 1 0 0
chr4:2930736|2930919 hsa-miR-6510-5p 1 0 0
chr4:2930736|2930919 hsa-miR-6880-5p 1 0 0
chr4:2930736|2930919 hsa-miR-4695-5p 1 0 0
chr4:2930736|2930919 hsa-miR-6867-5p 1 0 0
chr4:2930736|2930919 hsa-miR-6746-5p 1 0 0
chr4:2930736|2930919 hsa-miR-4722-5p 1 0 0
chr4:2930736|2930919 hsa-miR-24-3p 0 1 0
chr4:2930736|2930919 hsa-miR-6721-5p 1 1 0
chr4:2930736|2930919 hsa-miR-5589-5p 1 0 0
chr4:2930736|2930919 hsa-miR-6787-3p 0 1 0
chr4:2930736|2930919 hsa-miR-6732-5p 1 0 0
chr4:2930736|2930919 hsa-miR-6827-5p 1 0 0
chr4:2930736|2930919 hsa-miR-6798-5p 1 0 0
chr4:2930736|2930919 hsa-miR-6782-5p 1 1 0
chr4:2930736|2930919 hsa-miR-345-3p 1 0 0
chr4:2930736|2930919 hsa-miR-6786-5p 1 0 0
chr4:2930736|2930919 hsa-miR-5001-3p 0 1 0
chr4:2930736|2930919 hsa-miR-1228-5p 1 0 0
chr4:2930736|2930919 hsa-miR-6771-5p 1 0 0
chr4:2930736|2930919 hsa-miR-4787-5p 1 0 0
chr4:2930736|2930919 hsa-miR-6824-5p 1 0 0
chr4:2930736|2930919 hsa-miR-3158-5p 1 0 0
chr4:2930736|2930919 hsa-miR-3940-3p 0 1 0
chr4:2930736|2930919 hsa-miR-216a-3p 0 1 0
chr4:2930736|2930919 hsa-miR-6777-3p 0 1 0
chr4:2930736|2930919 hsa-miR-27b-3p 0 1 0
chr4:2930736|2930919 hsa-miR-4778-5p 1 0 0
chr4:2930736|2930919 hsa-miR-27a-3p 0 1 0
chr4:2930736|2930919 hsa-miR-10400-5p 1 0 0
chr4:2930736|2930919 hsa-miR-4763-3p 1 1 0
chr4:2930736|2930919 hsa-miR-6769b-5p 1 0 0
chr4:2930736|2930919 hsa-miR-6787-5p 1 1 0
chr4:2930736|2930919 hsa-miR-6816-5p 1 0 0
chr4:2930736|2930919 hsa-miR-1343-5p 1 0 0
chr4:2930736|2930919 hsa-miR-6752-5p 1 1 0
chr4:2930736|2930919 hsa-miR-6756-5p 1 1 0
chr4:2930736|2930919 hsa-miR-6803-5p 1 1 0
chr4:2930736|2930919 hsa-miR-6842-5p 0 1 0
chr4:2930736|2930919 hsa-miR-6851-5p 1 0 0
chr4:2930736|2930919 hsa-miR-7110-5p 0 1 0
chr4:2930736|2930919 hsa-miR-11181-3p 1 0 0
chr4:2930736|2930919 hsa-miR-1249-5p 1 1 0
chr4:2930736|2930919 hsa-miR-6722-3p 1 1 0
chr4:2930736|2930919 hsa-miR-6751-5p 1 1 0
chr4:2930736|2930919 hsa-miR-6797-5p 1 1 0
chr4:2930736|2930919 hsa-miR-7111-5p 1 1 0
chr4:2930736|2930919 hsa-miR-1915-3p 1 0 0
chr4:2930736|2930919 hsa-miR-3620-5p 1 1 0
chr4:2930736|2930919 hsa-miR-5189-5p 0 1 0
chr4:2930736|2930919 hsa-miR-6836-5p 1 0 0
chr4:2930736|2930919 hsa-miR-1909-3p 1 1 0
chr4:2930736|2930919 hsa-miR-328-5p 1 1 0
chr4:2930736|2930919 hsa-miR-449c-5p 0 1 0
chr4:2930736|2930919 hsa-miR-4685-5p 1 0 0
chr4:2930736|2930919 hsa-miR-4749-5p 1 0 0
chr4:2930736|2930919 hsa-miR-6777-5p 1 0 0
chr4:2930736|2930919 hsa-miR-6794-5p 1 0 0
chr4:2930736|2930919 hsa-miR-6848-5p 1 0 0
chr4:2930736|2930919 hsa-miR-6889-5p 1 0 0
chr4:2930736|2930919 hsa-miR-3187-5p 0 1 0
chr4:2930736|2930919 hsa-miR-34b-5p 0 1 0
chr4:2930736|2930919 hsa-miR-6511b-5p 1 0 0
chr4:2930736|2930919 hsa-miR-10398-5p 0 1 0
chr4:2930736|2930919 hsa-miR-6791-5p 1 0 0
chr4:2930736|2930919 hsa-miR-3681-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:2930736|2930919
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MCPGCGHQAEWEPRSGPCPLPDPHPPPVQGD
Nucleotide Sequence CTGTGCCCAGGCTGTGGGCACCAGGCAGAGTGGGAGCCTAGGTCAGGCCCCTGCCCACTGCCTGACCCCCACCCCCCGCCAGTCCAGGGAGAC
CircID chr4:2930736|2930919
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MSHCAQAVGTRQSGSLGQAPAHCLTPTPRQSRET
Nucleotide Sequence CTGAGCCACTGTGCCCAGGCTGTGGGCACCAGGCAGAGTGGGAGCCTAGGTCAGGCCCCTGCCCACTGCCTGACCCCCACCCCCCGCCAGTCCAGGGAGACC
CircID chr4:2930736|2930919
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MPGAHSLGTVAQLLSLERLCRVTQLLQEEEGEQKEPGPR
Nucleotide Sequence CTGCCTGGTGCCCACAGCCTGGGCACAGTGGCTCAGCTACTCAGCCTTGAGCGTCTGTGCCGGGTAACTCAGCTTCTGCAGGAGGAAGAAGGGGAGCAAAAAGAGCCCGGACCACGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab