CircRNA Information

General Information
circRNA Basic Information
CircID chr4:38697916|38698040
Strand +
CircType exon
Host Gene ENSG00000109787.11;
Algorism CIRI2;
Sequence CTCACTGACAACCCCTAGCCCAGGAGGAATTGCCTCTTCTGCTCCCCCTGCTAAATGGCCCTCTCCTCCGACTCCATGCTATGAAAACACAGCACCCTTCCCTTGAACTGCTACACATCACCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:38697916|38698040 hsa-miR-223-5p 0 0 1
chr4:38697916|38698040 hsa-miR-223-3p 0 0 1
chr4:38697916|38698040 hsa-miR-376b-5p 0 0 1
chr4:38697916|38698040 hsa-miR-376b-3p 0 0 1
chr4:38697916|38698040 hsa-miR-765 0 1 1
chr4:38697916|38698040 hsa-miR-298 0 1 1
chr4:38697916|38698040 hsa-miR-939-5p 0 0 1
chr4:38697916|38698040 hsa-miR-939-3p 0 0 1
chr4:38697916|38698040 hsa-miR-1262 1 1 1
chr4:38697916|38698040 hsa-miR-1289 0 0 1
chr4:38697916|38698040 hsa-miR-453 0 0 1
chr4:38697916|38698040 hsa-miR-376a 0 0 1
chr4:38697916|38698040 hsa-miR-608 1 0 0
chr4:38697916|38698040 hsa-miR-1293 1 0 0
chr4:38697916|38698040 hsa-miR-3141 1 0 0
chr4:38697916|38698040 hsa-miR-4270 1 0 0
chr4:38697916|38698040 hsa-miR-378g 1 1 0
chr4:38697916|38698040 hsa-miR-3689c 1 0 0
chr4:38697916|38698040 hsa-miR-4525 1 0 0
chr4:38697916|38698040 hsa-miR-4534 1 0 0
chr4:38697916|38698040 hsa-miR-1587 1 0 0
chr4:38697916|38698040 hsa-miR-4651 1 0 0
chr4:38697916|38698040 hsa-miR-4688 1 0 0
chr4:38697916|38698040 hsa-miR-4739 1 0 0
chr4:38697916|38698040 hsa-miR-4785 0 1 0
chr4:38697916|38698040 hsa-miR-5087 1 0 0
chr4:38697916|38698040 hsa-miR-5787 1 0 0
chr4:38697916|38698040 hsa-miR-6860 1 0 0
chr4:38697916|38698040 hsa-miR-7150 1 1 0
chr4:38697916|38698040 hsa-miR-7106-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6825-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6799-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6510-5p 1 1 0
chr4:38697916|38698040 hsa-miR-6880-5p 1 0 0
chr4:38697916|38698040 hsa-miR-7847-3p 1 0 0
chr4:38697916|38698040 hsa-miR-6741-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6727-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6721-5p 1 0 0
chr4:38697916|38698040 hsa-miR-512-3p 1 0 0
chr4:38697916|38698040 hsa-miR-197-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6716-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6772-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6798-5p 1 1 0
chr4:38697916|38698040 hsa-miR-6821-5p 1 0 0
chr4:38697916|38698040 hsa-miR-185-5p 0 1 0
chr4:38697916|38698040 hsa-miR-4640-5p 1 0 0
chr4:38697916|38698040 hsa-miR-1228-5p 1 0 0
chr4:38697916|38698040 hsa-miR-4690-5p 1 0 0
chr4:38697916|38698040 hsa-miR-877-5p 1 0 0
chr4:38697916|38698040 hsa-miR-149-3p 1 0 0
chr4:38697916|38698040 hsa-miR-6781-5p 1 0 0
chr4:38697916|38698040 hsa-miR-5010-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6792-5p 1 0 0
chr4:38697916|38698040 hsa-miR-1207-5p 1 0 0
chr4:38697916|38698040 hsa-miR-1233-5p 1 0 0
chr4:38697916|38698040 hsa-miR-3689b-3p 1 0 0
chr4:38697916|38698040 hsa-miR-4763-3p 1 0 0
chr4:38697916|38698040 hsa-miR-6769b-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6778-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6870-5p 1 1 0
chr4:38697916|38698040 hsa-miR-1343-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6752-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6754-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6756-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6819-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6851-5p 1 0 0
chr4:38697916|38698040 hsa-miR-10401-5p 1 0 0
chr4:38697916|38698040 hsa-miR-11181-3p 1 1 0
chr4:38697916|38698040 hsa-miR-1249-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6722-3p 1 1 0
chr4:38697916|38698040 hsa-miR-6779-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6780a-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6797-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6879-5p 1 0 0
chr4:38697916|38698040 hsa-miR-7111-5p 0 1 0
chr4:38697916|38698040 hsa-miR-4728-5p 1 0 0
chr4:38697916|38698040 hsa-miR-5196-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6780b-5p 1 0 0
chr4:38697916|38698040 hsa-miR-328-5p 1 1 0
chr4:38697916|38698040 hsa-miR-3689a-3p 1 0 0
chr4:38697916|38698040 hsa-miR-4701-3p 1 1 0
chr4:38697916|38698040 hsa-miR-4725-3p 1 0 0
chr4:38697916|38698040 hsa-miR-4726-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6729-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6794-5p 0 1 0
chr4:38697916|38698040 hsa-miR-6795-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6848-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6883-5p 1 0 0
chr4:38697916|38698040 hsa-miR-4723-5p 0 1 0
chr4:38697916|38698040 hsa-miR-6845-5p 1 0 0
chr4:38697916|38698040 hsa-miR-3198 0 1 0
chr4:38697916|38698040 hsa-miR-30c-1-3p 1 0 0
chr4:38697916|38698040 hsa-miR-6736-5p 1 0 0
chr4:38697916|38698040 hsa-miR-4747-5p 1 1 0
chr4:38697916|38698040 hsa-miR-6762-5p 1 0 0
chr4:38697916|38698040 hsa-miR-6783-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:38697916|38698040
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MTTPSPGGIASSAPPAKWPSPPTPCYENTAPFP
Nucleotide Sequence CTGACAACCCCTAGCCCAGGAGGAATTGCCTCTTCTGCTCCCCCTGCTAAATGGCCCTCTCCTCCGACTCCATGCTATGAAAACACAGCACCCTTCCCTTGA
CircID chr4:38697916|38698040
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MPLLLPLLNGPLLRLHAMKTQHPSLELLHITH
Nucleotide Sequence TTGCCTCTTCTGCTCCCCCTGCTAAATGGCCCTCTCCTCCGACTCCATGCTATGAAAACACAGCACCCTTCCCTTGAACTGCTACACATCACCCAC
CircID chr4:38697916|38698040
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MCSSSREGCCVFIAWSRRRGPFSRGSRRGNSSWARGCQ
Nucleotide Sequence ATGTGTAGCAGTTCAAGGGAAGGGTGCTGTGTTTTCATAGCATGGAGTCGGAGGAGAGGGCCATTTAGCAGGGGGAGCAGAAGAGGCAATTCCTCCTGGGCTAGGGGTTGTCAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab