CircNet

General Information

circRNA Basic Information

CircID	chr4:39913611\|39925933
Strand	-
CircType	exon
Host Gene	ENSG00000121892.14;
Algorism	find_circ;CIRI2;DCC;
Sequence	AATTTAGCTTGGGTTAAATCATATAACATCTGCTTTGAATTGGAAGATTGCAATGAAATTTTTATTCAGCTTTTTAGAACTCTCTTCTCAGTGATCAAATGGAATGGTAGGATTAGACATTATCCTGAAACAAACAGGAAAGGATCACTCCAGCTTGGCATAGGATAGAAGCTTGTAGAAAGATAGCATGAGAAGAAACTTCTGTGGCATTTGACTAGCACAATAGCCACAATAAGAAGGTACAAATGCACATGCTAGATTTGATGAGTTCTATCATCATGGAAGGTGATGGAGTTACTCAAGAATTATTGGACTCCATTCTTATTAACCTCATTCCTGCACATAAGAACTTAAATAAACAGTCCTTTGACCTTGCAAAAGTGCTATTGAAAAGAACAGTCCAGACTATTGAGGCATGCATTGCTAATTTTTTCAATCAAGTCCTGGTGCTGGGAAGATCATCAGTAAGTGATTTGTCAGAACATGTATTTGATCTGATTCAGGAACTTTTTGCTATAGATCCTCATTTATTATTATCCGTCATGCCACAGCTTGAATTCAAACTAAAGAGCAATGATGGAGAAGAGCGATTAGCTGTTGTTCGACTTCTAGCTAAATTGTTTGGCTCCAAAGATTCTGATTTGGCAACACAGAATCGTCCTCTTTGGCAATGTTTTCTTGGACG

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	PITA	miRanda	targetScan
chr4:39913611\|39925933	hsa-miR-196a-3p	0	1	1

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr4:39913611\|39925933
ORF Type	ORF1
Protein Length	146
Nucleotide Length	438
Protein Sequence	MHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPHLLLSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKDSDLATQNRPLWQCFLG
Nucleotide Sequence	ATGCACATGCTAGATTTGATGAGTTCTATCATCATGGAAGGTGATGGAGTTACTCAAGAATTATTGGACTCCATTCTTATTAACCTCATTCCTGCACATAAGAACTTAAATAAACAGTCCTTTGACCTTGCAAAAGTGCTATTGAAAAGAACAGTCCAGACTATTGAGGCATGCATTGCTAATTTTTTCAATCAAGTCCTGGTGCTGGGAAGATCATCAGTAAGTGATTTGTCAGAACATGTATTTGATCTGATTCAGGAACTTTTTGCTATAGATCCTCATTTATTATTATCCGTCATGCCACAGCTTGAATTCAAACTAAAGAGCAATGATGGAGAAGAGCGATTAGCTGTTGTTCGACTTCTAGCTAAATTGTTTGGCTCCAAAGATTCTGATTTGGCAACACAGAATCGTCCTCTTTGGCAATGTTTTCTTGGA

CircID	chr4:39913611\|39925933
ORF Type	ORF2
Protein Length	41
Nucleotide Length	123
Protein Sequence	MHASIVWTVLFNSTFARSKDCLFKFLCAGMRLIRMESNNS*
Nucleotide Sequence	ATGCATGCCTCAATAGTCTGGACTGTTCTTTTCAATAGCACTTTTGCAAGGTCAAAGGACTGTTTATTTAAGTTCTTATGTGCAGGAATGAGGTTAATAAGAATGGAGTCCAATAATTCTTGA

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr4:39913611\|39925933	UCHL5	2	0	0
chr4:39913611\|39925933	NOP56	2	2	1
chr4:39913611\|39925933	MOV10	0	0	1
chr4:39913611\|39925933	ELAVL1	5	3	1
chr4:39913611\|39925933	NCBP3	1	0	0
chr4:39913611\|39925933	PRPF8	5	0	0
chr4:39913611\|39925933	YTHDF1	1	0	0
chr4:39913611\|39925933	UPF1	6	0	0
chr4:39913611\|39925933	TAF15	0	1	0
chr4:39913611\|39925933	FMR1	7	0	4
chr4:39913611\|39925933	CPSF6	2	0	0
chr4:39913611\|39925933	NUDT21	1	1	0
chr4:39913611\|39925933	CPSF4	1	1	0
chr4:39913611\|39925933	CNBP	1	0	0
chr4:39913611\|39925933	RBM15B	4	0	0
chr4:39913611\|39925933	TROVE2	1	0	0
chr4:39913611\|39925933	FUS	4	1	0
chr4:39913611\|39925933	DGCR8	0	1	1
chr4:39913611\|39925933	QKI	0	0	3
chr4:39913611\|39925933	SRSF1	6	1	3
chr4:39913611\|39925933	NOP58	0	1	5
chr4:39913611\|39925933	U2AF1	3	0	5
chr4:39913611\|39925933	EIF3B	1	0	0
chr4:39913611\|39925933	U2AF2	41	8	21
chr4:39913611\|39925933	DDX54	1	0	13
chr4:39913611\|39925933	EFTUD2	1	0	0
chr4:39913611\|39925933	ELAVL3	1	0	0
chr4:39913611\|39925933	GRWD1	3	0	0
chr4:39913611\|39925933	RBM10	3	0	0
chr4:39913611\|39925933	FIP1L1	1	0	0
chr4:39913611\|39925933	PTBP1	2	1	0
chr4:39913611\|39925933	HNRNPC	29	3	2
chr4:39913611\|39925933	HNRNPD	2	0	0
chr4:39913611\|39925933	TRA2A	0	0	3
chr4:39913611\|39925933	DHX9	1	0	1
chr4:39913611\|39925933	HNRNPA1	5	2	0
chr4:39913611\|39925933	DDX3X	11	0	0
chr4:39913611\|39925933	ZC3H7B	3	0	0
chr4:39913611\|39925933	SMNDC1	0	0	3
chr4:39913611\|39925933	MSI2	0	0	1
chr4:39913611\|39925933	ACIN1	3	0	3
chr4:39913611\|39925933	SRSF7	1	0	1
chr4:39913611\|39925933	LIN28A	0	0	1
chr4:39913611\|39925933	LIN28B	3	0	5
chr4:39913611\|39925933	FXR1	0	0	5
chr4:39913611\|39925933	FXR2	0	0	3
chr4:39913611\|39925933	IGF2BP1	2	0	10
chr4:39913611\|39925933	IGF2BP3	0	0	3
chr4:39913611\|39925933	IGF2BP2	7	3	8
chr4:39913611\|39925933	NPM1	0	0	1
chr4:39913611\|39925933	TARDBP	7	0	0
chr4:39913611\|39925933	YTHDC1	7	0	0
chr4:39913611\|39925933	BUD13	1	0	0
chr4:39913611\|39925933	KHSRP	2	1	0
chr4:39913611\|39925933	RBM47	3	0	4
chr4:39913611\|39925933	YTHDF2	1	0	0
chr4:39913611\|39925933	CSTF2T	4	1	2
chr4:39913611\|39925933	CSTF2	12	0	0
chr4:39913611\|39925933	CPSF7	3	0	0
chr4:39913611\|39925933	RBM22	1	0	0
chr4:39913611\|39925933	TIAL1	4	0	0
chr4:39913611\|39925933	FBL	2	0	3
chr4:39913611\|39925933	ATXN2	4	0	0
chr4:39913611\|39925933	EWSR1	1	0	0
chr4:39913611\|39925933	EIF4A3	2	5	9
chr4:39913611\|39925933	AGO2	1	0	8

CircRNA Information