CircNet

General Information

circRNA Basic Information

CircID	chr4:42422807\|42444634
Strand	-
CircType	exon
Host Gene	ENSG00000124406.16;
Algorism	find_circ;CIRI2;CIRC
Sequence	TTTGTGGTGATAACTGTGTGTTTGAAAGCTGGATTGGAGACATCATATTGGACATGGTTCAGCCACATAGCGATATGGGGGAGCATCGCACTCTGGGTGGTGTTTTTTGGAATCTACTCATCTCTGTGGCCTGCCATTCCGATGGCCCCTGATATGTCAGGAGAGGCAGCCATGTTGTTCAGTTCTGGAGTCTTTTGGATGGGCTTGTTATTCATCCCTGTGGCATCTCTGCTCCTTGATGTGGTGTACAAGGTTATCAAGAGGACTGCTTTTAAAACATTGGTCGATGAAGTTCAGGAGCTGGAGGCAAAATCTCAAGACCCAGGAGCAGTTGTACTTGGAAAAAG

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	PITA	miRanda	targetScan
chr4:42422807\|42444634	hsa-miR-218-2-3p	0	1	1
chr4:42422807\|42444634	hsa-miR-139-3p	0	1	1

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr4:42422807\|42444634
ORF Type	ORF1
Protein Length	68
Nucleotide Length	204
Protein Sequence	MAPDMSGEAAMLFSSGVFWMGLLFIPVASLLLDVVYKVIKRTAFKTLVDEVQELEAKSQDPGAVVLGK
Nucleotide Sequence	ATGGCCCCTGATATGTCAGGAGAGGCAGCCATGTTGTTCAGTTCTGGAGTCTTTTGGATGGGCTTGTTATTCATCCCTGTGGCATCTCTGCTCCTTGATGTGGTGTACAAGGTTATCAAGAGGACTGCTTTTAAAACATTGGTCGATGAAGTTCAGGAGCTGGAGGCAAAATCTCAAGACCCAGGAGCAGTTGTACTTGGAAAA

CircID	chr4:42422807\|42444634
ORF Type	ORF2
Protein Length	36
Nucleotide Length	108
Protein Sequence	MWCTRLSRGLLLKHWSMKFRSWRQNLKTQEQLYLEK
Nucleotide Sequence	ATGTGGTGTACAAGGTTATCAAGAGGACTGCTTTTAAAACATTGGTCGATGAAGTTCAGGAGCTGGAGGCAAAATCTCAAGACCCAGGAGCAGTTGTACTTGGAAAAA

CircID	chr4:42422807\|42444634
ORF Type	ORF3
Protein Length	34
Nucleotide Length	102
Protein Sequence	MNNKPIQKTPELNNMAASPDISGAIGMAGHRDE*
Nucleotide Sequence	ATGAATAACAAGCCCATCCAAAAGACTCCAGAACTGAACAACATGGCTGCCTCTCCTGACATATCAGGGGCCATCGGAATGGCAGGCCACAGAGATGAGTAG

CircID	chr4:42422807\|42444634
ORF Type	ORF4
Protein Length	33
Nucleotide Length	99
Protein Sequence	MVQPHSDMGEHRTLGGVFWNLLISVACHSDGP*
Nucleotide Sequence	ATGGTTCAGCCACATAGCGATATGGGGGAGCATCGCACTCTGGGTGGTGTTTTTTGGAATCTACTCATCTCTGTGGCCTGCCATTCCGATGGCCCCTGA

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr4:42422807\|42444634	ELAVL1	1	3	0
chr4:42422807\|42444634	FIP1L1	0	1	0
chr4:42422807\|42444634	U2AF2	1	2	0
chr4:42422807\|42444634	SRSF1	0	0	1
chr4:42422807\|42444634	FUS	5	3	1
chr4:42422807\|42444634	NOP58	0	1	0
chr4:42422807\|42444634	NOP56	1	0	0
chr4:42422807\|42444634	CSTF2T	1	0	0
chr4:42422807\|42444634	PRPF8	0	0	1
chr4:42422807\|42444634	TAF15	1	0	0
chr4:42422807\|42444634	DKC1	1	0	0
chr4:42422807\|42444634	MOV10	0	0	1
chr4:42422807\|42444634	PTBP1	1	0	0
chr4:42422807\|42444634	CPSF3	0	1	0
chr4:42422807\|42444634	EIF4A3	1	0	4
chr4:42422807\|42444634	AGO2	0	0	1

CircRNA Information