CircRNA Information

General Information
circRNA Basic Information
CircID chr4:48420258|48420433
Strand -
CircType exon
Host Gene ENSG00000109171.13;
Algorism CIRI2;
Sequence CTCCTCACCTGGGCCTCCTATGGTTCAGAGCACAGTCTCAGCAAATCCTCCCAGCAATATCAACAGCGCTACTCTAACCAGACCTGCAGGGACAACTGCAATGAGAAGTGGCTTGCCCAGACCCAGTGCCCCTTCTGCTGGGGGCATACCAGTGCCTCGCAGCAAACTTGCACAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:48420258|48420433 hsa-miR-19a-5p 0 0 1
chr4:48420258|48420433 hsa-miR-19a-3p 0 0 1
chr4:48420258|48420433 hsa-miR-137-5p 0 0 1
chr4:48420258|48420433 hsa-miR-137-3p 0 0 1
chr4:48420258|48420433 hsa-miR-612 0 1 1
chr4:48420258|48420433 hsa-miR-657 0 0 1
chr4:48420258|48420433 hsa-miR-298 0 0 1
chr4:48420258|48420433 hsa-miR-922 0 0 1
chr4:48420258|48420433 hsa-miR-1205 0 1 1
chr4:48420258|48420433 hsa-miR-1267 0 0 1
chr4:48420258|48420433 hsa-miR-125a-3p 0 1 1
chr4:48420258|48420433 hsa-miR-193a-5p 0 0 1
chr4:48420258|48420433 hsa-miR-361-3p 0 0 1
chr4:48420258|48420433 hsa-miR-628-5p 0 0 1
chr4:48420258|48420433 hsa-miR-1285 0 0 1
chr4:48420258|48420433 hsa-miR-19b 0 0 1
chr4:48420258|48420433 hsa-miR-762 1 0 0
chr4:48420258|48420433 hsa-miR-760 1 0 0
chr4:48420258|48420433 hsa-miR-1183 1 1 0
chr4:48420258|48420433 hsa-miR-3154 1 1 0
chr4:48420258|48420433 hsa-miR-4266 0 1 0
chr4:48420258|48420433 hsa-miR-3689c 0 1 0
chr4:48420258|48420433 hsa-miR-4530 0 1 0
chr4:48420258|48420433 hsa-miR-4706 1 0 0
chr4:48420258|48420433 hsa-miR-4739 1 0 0
chr4:48420258|48420433 hsa-miR-4748 1 0 0
chr4:48420258|48420433 hsa-miR-5691 0 1 0
chr4:48420258|48420433 hsa-miR-5698 1 0 0
chr4:48420258|48420433 hsa-miR-6068 0 1 0
chr4:48420258|48420433 hsa-miR-12115 1 0 0
chr4:48420258|48420433 hsa-miR-4731-5p 1 0 0
chr4:48420258|48420433 hsa-miR-6861-5p 1 0 0
chr4:48420258|48420433 hsa-miR-7106-5p 1 0 0
chr4:48420258|48420433 hsa-miR-6894-5p 1 1 0
chr4:48420258|48420433 hsa-miR-224-5p 0 1 0
chr4:48420258|48420433 hsa-miR-6799-5p 1 0 0
chr4:48420258|48420433 hsa-miR-3192-5p 0 1 0
chr4:48420258|48420433 hsa-miR-4695-5p 0 1 0
chr4:48420258|48420433 hsa-miR-197-5p 1 0 0
chr4:48420258|48420433 hsa-miR-7109-5p 1 0 0
chr4:48420258|48420433 hsa-miR-6771-5p 1 0 0
chr4:48420258|48420433 hsa-miR-149-3p 1 0 0
chr4:48420258|48420433 hsa-miR-2355-3p 0 1 0
chr4:48420258|48420433 hsa-miR-4774-5p 0 1 0
chr4:48420258|48420433 hsa-miR-92a-3p 0 1 0
chr4:48420258|48420433 hsa-miR-25-3p 1 0 0
chr4:48420258|48420433 hsa-miR-1273h-5p 0 1 0
chr4:48420258|48420433 hsa-miR-3689b-3p 0 1 0
chr4:48420258|48420433 hsa-miR-4763-3p 1 0 0
chr4:48420258|48420433 hsa-miR-6778-5p 1 0 0
chr4:48420258|48420433 hsa-miR-6726-5p 1 0 0
chr4:48420258|48420433 hsa-miR-6743-5p 1 1 0
chr4:48420258|48420433 hsa-miR-6754-5p 1 0 0
chr4:48420258|48420433 hsa-miR-11181-3p 1 0 0
chr4:48420258|48420433 hsa-miR-6779-5p 1 1 0
chr4:48420258|48420433 hsa-miR-5196-5p 1 0 0
chr4:48420258|48420433 hsa-miR-3689a-3p 0 1 0
chr4:48420258|48420433 hsa-miR-4632-5p 1 0 0
chr4:48420258|48420433 hsa-miR-6794-5p 1 0 0
chr4:48420258|48420433 hsa-miR-6795-5p 1 0 0
chr4:48420258|48420433 hsa-miR-6848-5p 1 0 0
chr4:48420258|48420433 hsa-miR-939-5p 1 0 0
chr4:48420258|48420433 hsa-miR-4646-5p 1 0 0
chr4:48420258|48420433 hsa-miR-6791-5p 0 1 0
chr4:48420258|48420433 hsa-miR-10394-5p 0 1 0
chr4:48420258|48420433 hsa-miR-1912-5p 0 1 0
chr4:48420258|48420433 hsa-miR-7157-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:48420258|48420433
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MVQSTVSANPPSNINSATLTRPAGTTAMRSGLPRPSAPSAGGIPVPRSKLAQ
Nucleotide Sequence ATGGTTCAGAGCACAGTCTCAGCAAATCCTCCCAGCAATATCAACAGCGCTACTCTAACCAGACCTGCAGGGACAACTGCAATGAGAAGTGGCTTGCCCAGACCCAGTGCCCCTTCTGCTGGGGGCATACCAGTGCCTCGCAGCAAACTTGCACAG
CircID chr4:48420258|48420433
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MVCPQQKGHWVWASHFSLQLSLQVWLE
Nucleotide Sequence CTGGTATGCCCCCAGCAGAAGGGGCACTGGGTCTGGGCAAGCCACTTCTCATTGCAGTTGTCCCTGCAGGTCTGGTTAGAGTAG
CircID chr4:48420258|48420433
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence LCKFAARHWYAPSRRGTGSGQATSHCSCPCRSG
Nucleotide Sequence CTGTGCAAGTTTGCTGCGAGGCACTGGTATGCCCCCAGCAGAAGGGGCACTGGGTCTGGGCAAGCCACTTCTCATTGCAGTTGTCCCTGCAGGTCTGGTTAG
CircID chr4:48420258|48420433
ORF Type ORF4
Protein Length 46
Nucleotide Length 141
Protein Sequence MLRGTGMPPAEGALGLGKPLLIAVVPAGLVRVALLILLGGFAETVL
Nucleotide Sequence TTGCTGCGAGGCACTGGTATGCCCCCAGCAGAAGGGGCACTGGGTCTGGGCAAGCCACTTCTCATTGCAGTTGTCCCTGCAGGTCTGGTTAGAGTAGCGCTGTTGATATTGCTGGGAGGATTTGCTGAGACTGTGCTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab