CircRNA Information

General Information
circRNA Basic Information
CircID chr4:6300957|6301219
Strand -
CircType exon
Host Gene ENSG00000109501.12;
Algorism CIRI2;
Sequence CTGGATGTGGAGCAGGCCGAGGTCAACTTCGGCTGGAACCACCTGGAGCCCTATGCCCATTTCCTGCTCTCTGTCTTCTTCGTCATCTTCTCCTTCCCCATCGCCAGCAAGGACTGCATCCCCTGCTCGGAGCTGGCTGTCATCACCGGCTTCTTTACCGTGACCAGCTACCTGAGCCTGAGCACCCATGCAGAGCCCTACACGCGCAGGGCCCTGGCCACCGAGGTCACCGCCGGCCTGCTATCGCTGCTGCCCTCCATGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:6300957|6301219 hsa-miR-192-5p 0 0 1
chr4:6300957|6301219 hsa-miR-192-3p 0 0 1
chr4:6300957|6301219 hsa-miR-215-5p 0 0 1
chr4:6300957|6301219 hsa-miR-215-3p 0 0 1
chr4:6300957|6301219 hsa-miR-186-5p 0 0 1
chr4:6300957|6301219 hsa-miR-186-3p 0 0 1
chr4:6300957|6301219 hsa-miR-484 0 0 1
chr4:6300957|6301219 hsa-miR-503-5p 0 0 1
chr4:6300957|6301219 hsa-miR-503-3p 0 0 1
chr4:6300957|6301219 hsa-miR-760 1 0 1
chr4:6300957|6301219 hsa-miR-1234-3p 0 0 1
chr4:6300957|6301219 hsa-miR-1291 0 0 1
chr4:6300957|6301219 hsa-miR-1253 0 0 1
chr4:6300957|6301219 hsa-miR-1234 0 0 1
chr4:6300957|6301219 hsa-miR-615-3p 0 0 1
chr4:6300957|6301219 hsa-miR-502-5p 0 0 1
chr4:6300957|6301219 hsa-miR-876-3p 0 0 1
chr4:6300957|6301219 hsa-miR-1308 0 0 1
chr4:6300957|6301219 hsa-miR-24 0 0 1
chr4:6300957|6301219 hsa-miR-661 1 0 0
chr4:6300957|6301219 hsa-miR-658 1 0 0
chr4:6300957|6301219 hsa-miR-765 1 0 0
chr4:6300957|6301219 hsa-miR-663b 1 0 0
chr4:6300957|6301219 hsa-miR-1469 1 0 0
chr4:6300957|6301219 hsa-miR-2861 1 0 0
chr4:6300957|6301219 hsa-miR-3154 1 0 0
chr4:6300957|6301219 hsa-miR-3175 1 0 0
chr4:6300957|6301219 hsa-miR-4321 1 0 0
chr4:6300957|6301219 hsa-miR-4253 1 0 0
chr4:6300957|6301219 hsa-miR-4270 1 0 0
chr4:6300957|6301219 hsa-miR-4271 1 0 0
chr4:6300957|6301219 hsa-miR-3916 1 0 0
chr4:6300957|6301219 hsa-miR-3945 1 0 0
chr4:6300957|6301219 hsa-miR-4428 1 0 0
chr4:6300957|6301219 hsa-miR-4476 1 0 0
chr4:6300957|6301219 hsa-miR-4510 1 0 0
chr4:6300957|6301219 hsa-miR-4516 1 0 0
chr4:6300957|6301219 hsa-miR-4525 1 0 0
chr4:6300957|6301219 hsa-miR-4533 1 0 0
chr4:6300957|6301219 hsa-miR-3976 1 0 0
chr4:6300957|6301219 hsa-miR-4651 1 0 0
chr4:6300957|6301219 hsa-miR-4688 1 0 0
chr4:6300957|6301219 hsa-miR-4689 1 0 0
chr4:6300957|6301219 hsa-miR-4706 1 0 0
chr4:6300957|6301219 hsa-miR-4721 1 0 0
chr4:6300957|6301219 hsa-miR-4739 1 0 0
chr4:6300957|6301219 hsa-miR-5090 1 0 0
chr4:6300957|6301219 hsa-miR-5698 1 0 0
chr4:6300957|6301219 hsa-miR-6069 1 0 0
chr4:6300957|6301219 hsa-miR-6088 1 0 0
chr4:6300957|6301219 hsa-miR-6090 1 0 0
chr4:6300957|6301219 hsa-miR-6127 1 0 0
chr4:6300957|6301219 hsa-miR-6133 1 0 0
chr4:6300957|6301219 hsa-miR-8053 1 0 0
chr4:6300957|6301219 hsa-miR-8072 1 0 0
chr4:6300957|6301219 hsa-miR-8085 1 0 0
chr4:6300957|6301219 hsa-miR-504-3p 1 0 0
chr4:6300957|6301219 hsa-miR-7106-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6825-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6089 1 0 0
chr4:6300957|6301219 hsa-miR-6880-5p 1 0 0
chr4:6300957|6301219 hsa-miR-7847-3p 1 0 0
chr4:6300957|6301219 hsa-miR-4722-5p 1 0 0
chr4:6300957|6301219 hsa-miR-3677-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6890-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6820-5p 1 0 0
chr4:6300957|6301219 hsa-miR-3622b-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6806-5p 1 0 0
chr4:6300957|6301219 hsa-miR-3187-3p 1 0 0
chr4:6300957|6301219 hsa-miR-6721-5p 1 0 0
chr4:6300957|6301219 hsa-miR-197-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6716-5p 1 0 0
chr4:6300957|6301219 hsa-miR-3151-5p 1 0 0
chr4:6300957|6301219 hsa-miR-3180-3p 1 0 0
chr4:6300957|6301219 hsa-miR-6732-5p 1 0 0
chr4:6300957|6301219 hsa-miR-3190-3p 1 0 0
chr4:6300957|6301219 hsa-miR-6760-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6821-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6810-5p 1 0 0
chr4:6300957|6301219 hsa-miR-3934-3p 1 0 0
chr4:6300957|6301219 hsa-miR-6786-5p 1 0 0
chr4:6300957|6301219 hsa-miR-1226-5p 1 0 0
chr4:6300957|6301219 hsa-miR-1229-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6784-5p 1 0 0
chr4:6300957|6301219 hsa-miR-4640-5p 1 0 0
chr4:6300957|6301219 hsa-miR-3691-5p 1 0 0
chr4:6300957|6301219 hsa-miR-885-3p 1 0 0
chr4:6300957|6301219 hsa-miR-1908-5p 1 0 0
chr4:6300957|6301219 hsa-miR-1228-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6771-5p 1 0 0
chr4:6300957|6301219 hsa-miR-4690-5p 1 0 0
chr4:6300957|6301219 hsa-miR-3202 1 0 0
chr4:6300957|6301219 hsa-miR-4743-5p 1 0 0
chr4:6300957|6301219 hsa-miR-149-3p 1 0 0
chr4:6300957|6301219 hsa-miR-6717-5p 1 0 0
chr4:6300957|6301219 hsa-miR-3616-3p 1 0 0
chr4:6300957|6301219 hsa-miR-6824-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6800-5p 1 0 0
chr4:6300957|6301219 hsa-miR-423-5p 1 0 0
chr4:6300957|6301219 hsa-miR-500a-5p 1 0 0
chr4:6300957|6301219 hsa-miR-2355-3p 1 0 0
chr4:6300957|6301219 hsa-miR-6801-5p 1 0 0
chr4:6300957|6301219 hsa-miR-10400-5p 1 0 0
chr4:6300957|6301219 hsa-miR-1207-5p 1 0 0
chr4:6300957|6301219 hsa-miR-1233-5p 1 0 0
chr4:6300957|6301219 hsa-miR-4763-3p 1 0 0
chr4:6300957|6301219 hsa-miR-6778-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6816-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6870-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6775-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6726-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6743-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6752-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6756-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6769a-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6803-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6819-5p 1 0 0
chr4:6300957|6301219 hsa-miR-7110-5p 1 0 0
chr4:6300957|6301219 hsa-miR-11181-3p 1 0 0
chr4:6300957|6301219 hsa-miR-1249-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6722-3p 1 0 0
chr4:6300957|6301219 hsa-miR-6751-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6763-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6779-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6780a-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6788-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6797-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6879-5p 1 0 0
chr4:6300957|6301219 hsa-miR-7111-5p 1 0 0
chr4:6300957|6301219 hsa-miR-4728-5p 1 0 0
chr4:6300957|6301219 hsa-miR-5196-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6780b-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6836-5p 1 0 0
chr4:6300957|6301219 hsa-miR-1237-5p 1 0 0
chr4:6300957|6301219 hsa-miR-1909-3p 1 0 0
chr4:6300957|6301219 hsa-miR-328-5p 1 0 0
chr4:6300957|6301219 hsa-miR-4632-5p 1 0 0
chr4:6300957|6301219 hsa-miR-4649-5p 1 0 0
chr4:6300957|6301219 hsa-miR-4685-5p 1 0 0
chr4:6300957|6301219 hsa-miR-4725-3p 1 0 0
chr4:6300957|6301219 hsa-miR-4749-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6729-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6735-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6858-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6883-5p 1 0 0
chr4:6300957|6301219 hsa-miR-4697-5p 1 0 0
chr4:6300957|6301219 hsa-miR-4723-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6885-5p 1 0 0
chr4:6300957|6301219 hsa-miR-1910-3p 1 0 0
chr4:6300957|6301219 hsa-miR-6511a-5p 1 0 0
chr4:6300957|6301219 hsa-miR-3198 1 0 0
chr4:6300957|6301219 hsa-miR-6731-5p 1 0 0
chr4:6300957|6301219 hsa-miR-4700-5p 1 0 0
chr4:6300957|6301219 hsa-miR-3679-5p 1 0 0
chr4:6300957|6301219 hsa-miR-4747-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6876-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6891-5p 1 0 0
chr4:6300957|6301219 hsa-miR-4716-3p 1 0 0
chr4:6300957|6301219 hsa-miR-6766-5p 1 0 0
chr4:6300957|6301219 hsa-miR-6785-5p 1 0 0
chr4:6300957|6301219 hsa-miR-9851-5p 1 0 0
chr4:6300957|6301219 hsa-miR-9851-3p 1 0 0
chr4:6300957|6301219 hsa-miR-3619-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr4:6300957|6301219
ORF Type ORF1
Protein Length 87
Nucleotide Length 261
Protein Sequence LDVEQAEVNFGWNHLEPYAHFLLSVFFVIFSFPIASKDCIPCSELAVITGFFTVTSYLSLSTHAEPYTRRALATEVTAGLLSLLPSM
Nucleotide Sequence CTGGATGTGGAGCAGGCCGAGGTCAACTTCGGCTGGAACCACCTGGAGCCCTATGCCCATTTCCTGCTCTCTGTCTTCTTCGTCATCTTCTCCTTCCCCATCGCCAGCAAGGACTGCATCCCCTGCTCGGAGCTGGCTGTCATCACCGGCTTCTTTACCGTGACCAGCTACCTGAGCCTGAGCACCCATGCAGAGCCCTACACGCGCAGGGCCCTGGCCACCGAGGTCACCGCCGGCCTGCTATCGCTGCTGCCCTCCATG
CircID chr4:6300957|6301219
ORF Type ORF2
Protein Length 52
Nucleotide Length 159
Protein Sequence MWSRPRSTSAGTTWSPMPISCSLSSSSSSPSPSPARTASPARSWLSSPASLP
Nucleotide Sequence ATGTGGAGCAGGCCGAGGTCAACTTCGGCTGGAACCACCTGGAGCCCTATGCCCATTTCCTGCTCTCTGTCTTCTTCGTCATCTTCTCCTTCCCCATCGCCAGCAAGGACTGCATCCCCTGCTCGGAGCTGGCTGTCATCACCGGCTTCTTTACCGTGA
CircID chr4:6300957|6301219
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MQSPTRAGPWPPRSPPACYRCCPPC
Nucleotide Sequence ATGCAGAGCCCTACACGCGCAGGGCCCTGGCCACCGAGGTCACCGCCGGCCTGCTATCGCTGCTGCCCTCCATGC
CircID chr4:6300957|6301219
ORF Type ORF4
Protein Length 77
Nucleotide Length 231
Protein Sequence MEPPGALCPFPALCLLRHLLLPHRQQGLHPLLGAGCHHRLLYRDQLPEPEHPCRALHAQGPGHRGHRRPAIAAALHA
Nucleotide Sequence CTGGAACCACCTGGAGCCCTATGCCCATTTCCTGCTCTCTGTCTTCTTCGTCATCTTCTCCTTCCCCATCGCCAGCAAGGACTGCATCCCCTGCTCGGAGCTGGCTGTCATCACCGGCTTCTTTACCGTGACCAGCTACCTGAGCCTGAGCACCCATGCAGAGCCCTACACGCGCAGGGCCCTGGCCACCGAGGTCACCGCCGGCCTGCTATCGCTGCTGCCCTCCATGCC
CircID chr4:6300957|6301219
ORF Type ORF5
Protein Length 38
Nucleotide Length 117
Protein Sequence MVTVKKPVMTASSEQGMQSLLAMGKEKMTKKTESRKWA
Nucleotide Sequence CTGGTCACGGTAAAGAAGCCGGTGATGACAGCCAGCTCCGAGCAGGGGATGCAGTCCTTGCTGGCGATGGGGAAGGAGAAGATGACGAAGAAGACAGAGAGCAGGAAATGGGCATAG
CircID chr4:6300957|6301219
ORF Type ORF6
Protein Length 63
Nucleotide Length 189
Protein Sequence MGAQAQVAGHGKEAGDDSQLRAGDAVLAGDGEGEDDEEDREQEMGIGLQVVPAEVDLGLLHIQ
Nucleotide Sequence ATGGGTGCTCAGGCTCAGGTAGCTGGTCACGGTAAAGAAGCCGGTGATGACAGCCAGCTCCGAGCAGGGGATGCAGTCCTTGCTGGCGATGGGGAAGGAGAAGATGACGAAGAAGACAGAGAGCAGGAAATGGGCATAGGGCTCCAGGTGGTTCCAGCCGAAGTTGACCTCGGCCTGCTCCACATCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab