CircRNA Information

General Information
circRNA Basic Information
CircID chr4:6301354|6301471
Strand -
CircType exon
Host Gene ENSG00000109501.12;
Algorism CIRI2;
Sequence AGCTGAGGAATTTCAAGGGCACCTACTGCTACCTTGTGCCCTACCTGGTGTGCTTCATGTGGTGTGAGCTCTCCGTGGTCATCCTGCTGGAGTCCACCGGCCTGGGGCTGCTCCGCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:6301354|6301471 hsa-miR-214-5p 0 0 1
chr4:6301354|6301471 hsa-miR-214-3p 0 0 1
chr4:6301354|6301471 hsa-miR-624-5p 0 0 1
chr4:6301354|6301471 hsa-miR-624-3p 0 0 1
chr4:6301354|6301471 hsa-miR-766-5p 0 0 1
chr4:6301354|6301471 hsa-miR-766-3p 0 0 1
chr4:6301354|6301471 hsa-miR-938 0 0 1
chr4:6301354|6301471 hsa-miR-1228-5p 0 0 1
chr4:6301354|6301471 hsa-miR-1228-3p 0 0 1
chr4:6301354|6301471 hsa-miR-508-5p 0 1 1
chr4:6301354|6301471 hsa-miR-338-3p 0 0 1
chr4:6301354|6301471 hsa-miR-342-3p 0 1 1
chr4:6301354|6301471 hsa-miR-203 0 0 1
chr4:6301354|6301471 hsa-miR-220a 0 0 1
chr4:6301354|6301471 hsa-miR-761 0 1 0
chr4:6301354|6301471 hsa-miR-4530 0 1 0
chr4:6301354|6301471 hsa-miR-6081 0 1 0
chr4:6301354|6301471 hsa-miR-8060 0 1 0
chr4:6301354|6301471 hsa-miR-8071 0 1 0
chr4:6301354|6301471 hsa-miR-6744-5p 0 1 0
chr4:6301354|6301471 hsa-miR-4733-3p 0 1 0
chr4:6301354|6301471 hsa-let-7i-5p 0 1 0
chr4:6301354|6301471 hsa-miR-3670 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:6301354|6301471
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MCPTWCASCGVSSPWSSCWSPPAWGCSA
Nucleotide Sequence TTGTGCCCTACCTGGTGTGCTTCATGTGGTGTGAGCTCTCCGTGGTCATCCTGCTGGAGTCCACCGGCCTGGGGCTGCTCCGCG
CircID chr4:6301354|6301471
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence LRNFKGTYCYLVPYLVCFMWCELSVVILLESTGLGLLR
Nucleotide Sequence CTGAGGAATTTCAAGGGCACCTACTGCTACCTTGTGCCCTACCTGGTGTGCTTCATGTGGTGTGAGCTCTCCGTGGTCATCCTGCTGGAGTCCACCGGCCTGGGGCTGCTCCGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab