CircRNA Information

General Information
circRNA Basic Information
CircID chr4:6302276|6302559
Strand -
CircType exon
Host Gene ENSG00000109501.12;
Algorism CIRI2;
Sequence CATCCTGGAGGGCCGCCTGGGCAGCAAGTGGCCTGTCTTCGAGCTCAAGGCCATCAGCTGCCTCAACTGCATGGCCCAGCTCTCACCCACCAGGCGGCACGTGAAGATCGAGCACGACTGGCGCAGCACCGTGCATGGCGCCGTGAAGTTCGCCTTCGACTTCTTTTTCTTCCCATTCCTGTCGGCGGCCTGAGGATGGTCCGCCACGAGGAGCTTCCAGTGCATGTTGCCATGAGGCCTTTCCCCAGTGTGGCCCCAGCCCGACAGGCATGCACCAGTGCCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:6302276|6302559 hsa-miR-412-5p 0 0 1
chr4:6302276|6302559 hsa-miR-412-3p 0 0 1
chr4:6302276|6302559 hsa-miR-541-5p 0 0 1
chr4:6302276|6302559 hsa-miR-541-3p 0 0 1
chr4:6302276|6302559 hsa-miR-665 0 0 1
chr4:6302276|6302559 hsa-miR-1204 0 0 1
chr4:6302276|6302559 hsa-miR-1304-5p 0 0 1
chr4:6302276|6302559 hsa-miR-1304-3p 0 0 1
chr4:6302276|6302559 hsa-miR-1250-5p 0 0 1
chr4:6302276|6302559 hsa-miR-1250-3p 0 0 1
chr4:6302276|6302559 hsa-miR-1262 0 0 1
chr4:6302276|6302559 hsa-miR-1827 0 0 1
chr4:6302276|6302559 hsa-miR-671-5p 0 0 1
chr4:6302276|6302559 hsa-miR-654-5p 0 0 1
chr4:6302276|6302559 hsa-miR-762 1 0 0
chr4:6302276|6302559 hsa-miR-760 1 0 0
chr4:6302276|6302559 hsa-miR-920 1 0 0
chr4:6302276|6302559 hsa-miR-3175 1 0 0
chr4:6302276|6302559 hsa-miR-3185 1 0 0
chr4:6302276|6302559 hsa-miR-3196 1 0 0
chr4:6302276|6302559 hsa-miR-3937 1 0 0
chr4:6302276|6302559 hsa-miR-4492 1 0 0
chr4:6302276|6302559 hsa-miR-4498 1 0 0
chr4:6302276|6302559 hsa-miR-4507 1 0 0
chr4:6302276|6302559 hsa-miR-4514 1 0 0
chr4:6302276|6302559 hsa-miR-1587 1 0 0
chr4:6302276|6302559 hsa-miR-4651 1 0 0
chr4:6302276|6302559 hsa-miR-4654 1 0 0
chr4:6302276|6302559 hsa-miR-4656 1 0 0
chr4:6302276|6302559 hsa-miR-4674 1 0 0
chr4:6302276|6302559 hsa-miR-4710 1 0 0
chr4:6302276|6302559 hsa-miR-4739 1 0 0
chr4:6302276|6302559 hsa-miR-4741 1 0 0
chr4:6302276|6302559 hsa-miR-5787 1 0 0
chr4:6302276|6302559 hsa-miR-8085 1 0 0
chr4:6302276|6302559 hsa-miR-8089 1 0 0
chr4:6302276|6302559 hsa-miR-12128 1 0 0
chr4:6302276|6302559 hsa-miR-4433b-3p 1 0 0
chr4:6302276|6302559 hsa-miR-4731-5p 1 0 0
chr4:6302276|6302559 hsa-miR-4433a-3p 1 0 0
chr4:6302276|6302559 hsa-miR-3150a-3p 1 0 0
chr4:6302276|6302559 hsa-miR-6741-5p 1 0 0
chr4:6302276|6302559 hsa-miR-6721-5p 1 0 0
chr4:6302276|6302559 hsa-miR-6748-5p 1 0 0
chr4:6302276|6302559 hsa-miR-6793-5p 1 0 0
chr4:6302276|6302559 hsa-miR-1226-5p 1 0 0
chr4:6302276|6302559 hsa-miR-3944-3p 1 0 0
chr4:6302276|6302559 hsa-miR-1229-5p 1 0 0
chr4:6302276|6302559 hsa-miR-4640-5p 1 0 0
chr4:6302276|6302559 hsa-miR-1228-5p 1 0 0
chr4:6302276|6302559 hsa-miR-296-3p 1 0 0
chr4:6302276|6302559 hsa-miR-92b-5p 1 0 0
chr4:6302276|6302559 hsa-miR-4446-3p 1 0 0
chr4:6302276|6302559 hsa-miR-149-3p 1 0 0
chr4:6302276|6302559 hsa-miR-6877-5p 1 0 0
chr4:6302276|6302559 hsa-miR-483-5p 1 0 0
chr4:6302276|6302559 hsa-miR-1233-5p 1 0 0
chr4:6302276|6302559 hsa-miR-4763-3p 1 0 0
chr4:6302276|6302559 hsa-miR-6769b-5p 1 0 0
chr4:6302276|6302559 hsa-miR-6778-5p 1 0 0
chr4:6302276|6302559 hsa-miR-6812-5p 1 0 0
chr4:6302276|6302559 hsa-miR-6870-5p 1 0 0
chr4:6302276|6302559 hsa-miR-1343-5p 1 0 0
chr4:6302276|6302559 hsa-miR-5001-5p 1 0 0
chr4:6302276|6302559 hsa-miR-6726-5p 1 0 0
chr4:6302276|6302559 hsa-miR-6756-5p 1 0 0
chr4:6302276|6302559 hsa-miR-7107-5p 1 0 0
chr4:6302276|6302559 hsa-miR-1249-5p 1 0 0
chr4:6302276|6302559 hsa-miR-6779-5p 1 0 0
chr4:6302276|6302559 hsa-miR-6780a-5p 1 0 0
chr4:6302276|6302559 hsa-miR-3620-5p 1 0 0
chr4:6302276|6302559 hsa-miR-5196-5p 1 0 0
chr4:6302276|6302559 hsa-miR-6780b-5p 1 0 0
chr4:6302276|6302559 hsa-miR-4632-5p 1 0 0
chr4:6302276|6302559 hsa-miR-4701-3p 1 0 0
chr4:6302276|6302559 hsa-miR-939-5p 1 0 0
chr4:6302276|6302559 hsa-miR-4758-5p 1 0 0
chr4:6302276|6302559 hsa-miR-3940-5p 1 0 0
chr4:6302276|6302559 hsa-miR-6731-5p 1 0 0
chr4:6302276|6302559 hsa-miR-6736-5p 1 0 0
chr4:6302276|6302559 hsa-miR-4646-5p 1 0 0
chr4:6302276|6302559 hsa-miR-6766-5p 1 0 0
chr4:6302276|6302559 hsa-miR-6785-5p 1 0 0
chr4:6302276|6302559 hsa-miR-6762-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:6302276|6302559
ORF Type ORF1
Protein Length 75
Nucleotide Length 225
Protein Sequence MPQLHGPALTHQAAREDRARLAQHRAWRREVRLRLLFLPIPVGGLRMVRHEELPVHVAMRPFPSVAPARQACTSA
Nucleotide Sequence CTGCCTCAACTGCATGGCCCAGCTCTCACCCACCAGGCGGCACGTGAAGATCGAGCACGACTGGCGCAGCACCGTGCATGGCGCCGTGAAGTTCGCCTTCGACTTCTTTTTCTTCCCATTCCTGTCGGCGGCCTGAGGATGGTCCGCCACGAGGAGCTTCCAGTGCATGTTGCCATGAGGCCTTTCCCCAGTGTGGCCCCAGCCCGACAGGCATGCACCAGTGCC
CircID chr4:6302276|6302559
ORF Type ORF2
Protein Length 62
Nucleotide Length 189
Protein Sequence MEGRLGSKWPVFELKAISCLNCMAQLSPTRRHVKIEHDWRSTVHGAVKFAFDFFFFPFLSAA
Nucleotide Sequence CTGGAGGGCCGCCTGGGCAGCAAGTGGCCTGTCTTCGAGCTCAAGGCCATCAGCTGCCTCAACTGCATGGCCCAGCTCTCACCCACCAGGCGGCACGTGAAGATCGAGCACGACTGGCGCAGCACCGTGCATGGCGCCGTGAAGTTCGCCTTCGACTTCTTTTTCTTCCCATTCCTGTCGGCGGCCTGA
CircID chr4:6302276|6302559
ORF Type ORF3
Protein Length 71
Nucleotide Length 216
Protein Sequence MVHACRAGATLGKGLMATCTGSSSWRTILRPPTGMGRKRSRRRTSRRHARCCASRARSSRAAWWVRAGPCS
Nucleotide Sequence CTGGTGCATGCCTGTCGGGCTGGGGCCACACTGGGGAAAGGCCTCATGGCAACATGCACTGGAAGCTCCTCGTGGCGGACCATCCTCAGGCCGCCGACAGGAATGGGAAGAAAAAGAAGTCGAAGGCGAACTTCACGGCGCCATGCACGGTGCTGCGCCAGTCGTGCTCGATCTTCACGTGCCGCCTGGTGGGTGAGAGCTGGGCCATGCAGTTGA
CircID chr4:6302276|6302559
ORF Type ORF4
Protein Length 62
Nucleotide Length 189
Protein Sequence MPVGLGPHWGKASWQHALEAPRGGPSSGRRQEWEEKEVEGELHGAMHGAAPVVLDLHVPPGG
Nucleotide Sequence ATGCCTGTCGGGCTGGGGCCACACTGGGGAAAGGCCTCATGGCAACATGCACTGGAAGCTCCTCGTGGCGGACCATCCTCAGGCCGCCGACAGGAATGGGAAGAAAAAGAAGTCGAAGGCGAACTTCACGGCGCCATGCACGGTGCTGCGCCAGTCGTGCTCGATCTTCACGTGCCGCCTGGTGGGTGA
CircID chr4:6302276|6302559
ORF Type ORF5
Protein Length 26
Nucleotide Length 78
Protein Sequence MGHAVEAADGLELEDRPLAAQAALQD
Nucleotide Sequence CTGGGCCATGCAGTTGAGGCAGCTGATGGCCTTGAGCTCGAAGACAGGCCACTTGCTGCCCAGGCGGCCCTCCAGGAT
CircID chr4:6302276|6302559
ORF Type ORF6
Protein Length 89
Nucleotide Length 267
Protein Sequence MSGWGHTGERPHGNMHWKLLVADHPQAADRNGKKKKSKANFTAPCTVLRQSCSIFTCRLVGESWAMQLRQLMALSSKTGHLLPRRPSRM
Nucleotide Sequence CTGTCGGGCTGGGGCCACACTGGGGAAAGGCCTCATGGCAACATGCACTGGAAGCTCCTCGTGGCGGACCATCCTCAGGCCGCCGACAGGAATGGGAAGAAAAAGAAGTCGAAGGCGAACTTCACGGCGCCATGCACGGTGCTGCGCCAGTCGTGCTCGATCTTCACGTGCCGCCTGGTGGGTGAGAGCTGGGCCATGCAGTTGAGGCAGCTGATGGCCTTGAGCTCGAAGACAGGCCACTTGCTGCCCAGGCGGCCCTCCAGGATG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab