CircRNA Information

General Information
circRNA Basic Information
CircID chr4:6640998|6641239
Strand +
CircType exon
Host Gene ENSG00000179010.13;
Algorism CIRI2;
Sequence GACTCGCTCTTCTCTATCCGCCGGACCAGCTCCACCAGCATCTCTGCCATCTTCGCAATCTCCTTGGCCTTCTCCTCGGCCTTCTCGCACCTCTTGGCCGCCCGGCCCTCGGCCGCGTCGCCCGGGTTCTGGAGGTGGTTGAGGGCGCTCTCCTCCGAGGCCTCCACCTGCGTTTTGATCTGGATGAGCATATTGTCCATCTCCCACAGCTTGCTCCGGTTCCGCAGGTACGCCCGCCCGTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:6640998|6641239 hsa-miR-585-5p 0 0 1
chr4:6640998|6641239 hsa-miR-585-3p 0 0 1
chr4:6640998|6641239 hsa-miR-650 0 0 1
chr4:6640998|6641239 hsa-miR-1323 0 0 1
chr4:6640998|6641239 hsa-miR-765 1 1 1
chr4:6640998|6641239 hsa-miR-1203 0 0 1
chr4:6640998|6641239 hsa-miR-1253 0 0 1
chr4:6640998|6641239 hsa-miR-548o-3p 0 0 1
chr4:6640998|6641239 hsa-miR-548o 0 0 1
chr4:6640998|6641239 hsa-miR-339-3p 0 1 1
chr4:6640998|6641239 hsa-miR-338-5p 0 0 1
chr4:6640998|6641239 hsa-miR-151-5p 0 0 1
chr4:6640998|6641239 hsa-miR-138 0 0 1
chr4:6640998|6641239 hsa-miR-638 1 0 0
chr4:6640998|6641239 hsa-miR-663a 1 0 0
chr4:6640998|6641239 hsa-miR-762 1 0 0
chr4:6640998|6641239 hsa-miR-2861 1 0 0
chr4:6640998|6641239 hsa-miR-3132 1 1 0
chr4:6640998|6641239 hsa-miR-3185 1 0 0
chr4:6640998|6641239 hsa-miR-3665 1 1 0
chr4:6640998|6641239 hsa-miR-4428 0 1 0
chr4:6640998|6641239 hsa-miR-4434 0 1 0
chr4:6640998|6641239 hsa-miR-4450 1 0 0
chr4:6640998|6641239 hsa-miR-4466 1 0 0
chr4:6640998|6641239 hsa-miR-3689c 0 1 0
chr4:6640998|6641239 hsa-miR-4487 1 0 0
chr4:6640998|6641239 hsa-miR-4508 1 0 0
chr4:6640998|6641239 hsa-miR-4516 0 1 0
chr4:6640998|6641239 hsa-miR-1587 1 0 0
chr4:6640998|6641239 hsa-miR-4647 1 1 0
chr4:6640998|6641239 hsa-miR-4651 1 0 0
chr4:6640998|6641239 hsa-miR-4656 1 0 0
chr4:6640998|6641239 hsa-miR-4662b 0 1 0
chr4:6640998|6641239 hsa-miR-4737 0 1 0
chr4:6640998|6641239 hsa-miR-4767 1 1 0
chr4:6640998|6641239 hsa-miR-4784 1 0 0
chr4:6640998|6641239 hsa-miR-5192 1 0 0
chr4:6640998|6641239 hsa-miR-5703 0 1 0
chr4:6640998|6641239 hsa-miR-5787 1 0 0
chr4:6640998|6641239 hsa-miR-6085 1 0 0
chr4:6640998|6641239 hsa-miR-6086 1 1 0
chr4:6640998|6641239 hsa-miR-6090 1 0 0
chr4:6640998|6641239 hsa-miR-6126 1 0 0
chr4:6640998|6641239 hsa-miR-6131 0 1 0
chr4:6640998|6641239 hsa-miR-12114 0 1 0
chr4:6640998|6641239 hsa-miR-12115 1 1 0
chr4:6640998|6641239 hsa-miR-12128 1 0 0
chr4:6640998|6641239 hsa-miR-138-5p 1 1 0
chr4:6640998|6641239 hsa-miR-671-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6894-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6857-5p 1 0 0
chr4:6640998|6641239 hsa-miR-4687-3p 1 0 0
chr4:6640998|6641239 hsa-miR-8071 1 0 0
chr4:6640998|6641239 hsa-miR-3934-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6089 1 1 0
chr4:6640998|6641239 hsa-miR-6757-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6880-5p 1 1 0
chr4:6640998|6641239 hsa-miR-7847-3p 1 1 0
chr4:6640998|6641239 hsa-miR-4695-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6746-5p 1 0 0
chr4:6640998|6641239 hsa-miR-4753-5p 0 1 0
chr4:6640998|6641239 hsa-miR-7160-5p 1 1 0
chr4:6640998|6641239 hsa-miR-6820-5p 1 0 0
chr4:6640998|6641239 hsa-miR-4474-3p 1 0 0
chr4:6640998|6641239 hsa-miR-4655-5p 1 0 0
chr4:6640998|6641239 hsa-miR-197-5p 1 0 0
chr4:6640998|6641239 hsa-miR-8069 1 0 0
chr4:6640998|6641239 hsa-miR-185-3p 1 0 0
chr4:6640998|6641239 hsa-miR-6770-5p 0 1 0
chr4:6640998|6641239 hsa-miR-6760-5p 1 1 0
chr4:6640998|6641239 hsa-miR-6782-5p 1 1 0
chr4:6640998|6641239 hsa-miR-6874-5p 0 1 0
chr4:6640998|6641239 hsa-miR-3150b-3p 1 1 0
chr4:6640998|6641239 hsa-miR-6888-5p 1 0 0
chr4:6640998|6641239 hsa-miR-30b-3p 0 1 0
chr4:6640998|6641239 hsa-miR-6850-5p 0 1 0
chr4:6640998|6641239 hsa-miR-6786-5p 1 0 0
chr4:6640998|6641239 hsa-miR-1228-5p 0 1 0
chr4:6640998|6641239 hsa-miR-877-5p 1 0 0
chr4:6640998|6641239 hsa-miR-4743-5p 1 0 0
chr4:6640998|6641239 hsa-miR-149-3p 1 0 0
chr4:6640998|6641239 hsa-miR-6802-5p 0 1 0
chr4:6640998|6641239 hsa-miR-2115-3p 0 1 0
chr4:6640998|6641239 hsa-miR-6781-5p 1 1 0
chr4:6640998|6641239 hsa-miR-7152-3p 0 1 0
chr4:6640998|6641239 hsa-miR-1288-5p 0 1 0
chr4:6640998|6641239 hsa-miR-4750-5p 1 1 0
chr4:6640998|6641239 hsa-miR-5197-3p 0 1 0
chr4:6640998|6641239 hsa-miR-10400-5p 1 0 0
chr4:6640998|6641239 hsa-miR-1207-5p 1 1 0
chr4:6640998|6641239 hsa-miR-1233-5p 1 0 0
chr4:6640998|6641239 hsa-miR-3689b-3p 0 1 0
chr4:6640998|6641239 hsa-miR-4763-3p 1 1 0
chr4:6640998|6641239 hsa-miR-6778-5p 1 1 0
chr4:6640998|6641239 hsa-miR-6787-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6865-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6870-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6775-5p 1 0 0
chr4:6640998|6641239 hsa-miR-1343-5p 1 0 0
chr4:6640998|6641239 hsa-miR-5001-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6726-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6754-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6756-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6815-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6851-5p 1 0 0
chr4:6640998|6641239 hsa-miR-11181-3p 0 1 0
chr4:6640998|6641239 hsa-miR-6779-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6808-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6879-5p 1 0 0
chr4:6640998|6641239 hsa-miR-3620-5p 1 0 0
chr4:6640998|6641239 hsa-miR-5196-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6780b-5p 1 0 0
chr4:6640998|6641239 hsa-miR-10396b-5p 1 0 0
chr4:6640998|6641239 hsa-miR-4649-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6729-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6735-5p 1 0 0
chr4:6640998|6641239 hsa-miR-675-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6777-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6846-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6848-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6858-5p 1 0 0
chr4:6640998|6641239 hsa-miR-6831-5p 1 0 0
chr4:6640998|6641239 hsa-miR-939-5p 1 0 0
chr4:6640998|6641239 hsa-miR-30c-1-3p 0 1 0
chr4:6640998|6641239 hsa-miR-6849-5p 1 0 0
chr4:6640998|6641239 hsa-miR-9851-5p 1 0 0
chr4:6640998|6641239 hsa-miR-498-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:6640998|6641239
ORF Type ORF1
Protein Length 59
Nucleotide Length 177
Protein Sequence MAFSSAFSHLLAARPSAASPGFWRWLRALSSEASTCVLIWMSILSISHSLLRFRRYARP
Nucleotide Sequence TTGGCCTTCTCCTCGGCCTTCTCGCACCTCTTGGCCGCCCGGCCCTCGGCCGCGTCGCCCGGGTTCTGGAGGTGGTTGAGGGCGCTCTCCTCCGAGGCCTCCACCTGCGTTTTGATCTGGATGAGCATATTGTCCATCTCCCACAGCTTGCTCCGGTTCCGCAGGTACGCCCGCCCG
CircID chr4:6640998|6641239
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MPSSQSPWPSPRPSRTSWPPGPRPRRPGSGGG
Nucleotide Sequence CTGCCATCTTCGCAATCTCCTTGGCCTTCTCCTCGGCCTTCTCGCACCTCTTGGCCGCCCGGCCCTCGGCCGCGTCGCCCGGGTTCTGGAGGTGGTTGA
CircID chr4:6640998|6641239
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MEVVEGALLRGLHLRFDLDEHIVHLPQLAPVPQVRPPV
Nucleotide Sequence CTGGAGGTGGTTGAGGGCGCTCTCCTCCGAGGCCTCCACCTGCGTTTTGATCTGGATGAGCATATTGTCCATCTCCCACAGCTTGCTCCGGTTCCGCAGGTACGCCCGCCCGTG
CircID chr4:6640998|6641239
ORF Type ORF4
Protein Length 75
Nucleotide Length 225
Protein Sequence MRNRSKLWEMDNMLIQIKTQVEASEESALNHLQNPGDAAEGRAAKRCEKAEEKAKEIAKMAEMLVELVRRIEKSE
Nucleotide Sequence CTGCGGAACCGGAGCAAGCTGTGGGAGATGGACAATATGCTCATCCAGATCAAAACGCAGGTGGAGGCCTCGGAGGAGAGCGCCCTCAACCACCTCCAGAACCCGGGCGACGCGGCCGAGGGCCGGGCGGCCAAGAGGTGCGAGAAGGCCGAGGAGAAGGCCAAGGAGATTGCGAAGATGGCAGAGATGCTGGTGGAGCTGGTCCGGCGGATAGAGAAGAGCGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab