CircRNA Information

General Information
circRNA Basic Information
CircID chr4:6641166|6641750
Strand +
CircType exon
Host Gene ENSG00000179010.13;
Algorism CIRI2;
Sequence CAGAATCCATTGGCTGGAAACCGCCGACCGCGCTCACGACGACTCGCTCTTCTCTATCCGCCGGACCAGCTCCACCAGCATCTCTGCCATCTTCGCAATCTCCTTGGCCTTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:6641166|6641750 hsa-miR-1246 0 0 1
chr4:6641166|6641750 hsa-miR-1253 0 0 1
chr4:6641166|6641750 hsa-miR-339-3p 0 0 1
chr4:6641166|6641750 hsa-miR-138 0 0 1
chr4:6641166|6641750 hsa-miR-571 1 0 0
chr4:6641166|6641750 hsa-miR-601 1 0 0
chr4:6641166|6641750 hsa-miR-638 1 0 0
chr4:6641166|6641750 hsa-miR-663a 1 0 0
chr4:6641166|6641750 hsa-miR-658 1 0 0
chr4:6641166|6641750 hsa-miR-762 1 0 0
chr4:6641166|6641750 hsa-miR-2861 1 0 0
chr4:6641166|6641750 hsa-miR-3132 1 1 0
chr4:6641166|6641750 hsa-miR-3138 1 0 0
chr4:6641166|6641750 hsa-miR-3154 1 0 0
chr4:6641166|6641750 hsa-miR-3185 1 0 0
chr4:6641166|6641750 hsa-miR-4270 1 0 0
chr4:6641166|6641750 hsa-miR-4428 0 1 0
chr4:6641166|6641750 hsa-miR-4430 1 0 0
chr4:6641166|6641750 hsa-miR-4450 1 0 0
chr4:6641166|6641750 hsa-miR-3135b 1 0 0
chr4:6641166|6641750 hsa-miR-4466 1 0 0
chr4:6641166|6641750 hsa-miR-4487 1 0 0
chr4:6641166|6641750 hsa-miR-4498 1 0 0
chr4:6641166|6641750 hsa-miR-4505 1 0 0
chr4:6641166|6641750 hsa-miR-4508 1 0 0
chr4:6641166|6641750 hsa-miR-4516 1 0 0
chr4:6641166|6641750 hsa-miR-4534 1 0 0
chr4:6641166|6641750 hsa-miR-1587 1 0 0
chr4:6641166|6641750 hsa-miR-4647 1 1 0
chr4:6641166|6641750 hsa-miR-4706 1 0 0
chr4:6641166|6641750 hsa-miR-4784 1 0 0
chr4:6641166|6641750 hsa-miR-5191 1 0 0
chr4:6641166|6641750 hsa-miR-5698 1 0 0
chr4:6641166|6641750 hsa-miR-5739 1 0 0
chr4:6641166|6641750 hsa-miR-6085 1 0 0
chr4:6641166|6641750 hsa-miR-6086 1 1 0
chr4:6641166|6641750 hsa-miR-6126 1 0 0
chr4:6641166|6641750 hsa-miR-6131 1 1 0
chr4:6641166|6641750 hsa-miR-8075 1 0 0
chr4:6641166|6641750 hsa-miR-8085 1 0 0
chr4:6641166|6641750 hsa-miR-12115 1 0 0
chr4:6641166|6641750 hsa-miR-12128 1 0 0
chr4:6641166|6641750 hsa-miR-138-5p 1 1 0
chr4:6641166|6641750 hsa-miR-135a-3p 1 0 0
chr4:6641166|6641750 hsa-miR-323a-5p 1 0 0
chr4:6641166|6641750 hsa-miR-1287-5p 1 0 0
chr4:6641166|6641750 hsa-miR-671-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6894-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6857-5p 1 0 0
chr4:6641166|6641750 hsa-miR-8071 1 0 0
chr4:6641166|6641750 hsa-miR-3926 1 0 0
chr4:6641166|6641750 hsa-miR-6880-5p 1 0 0
chr4:6641166|6641750 hsa-miR-4695-5p 1 0 0
chr4:6641166|6641750 hsa-miR-4753-5p 0 1 0
chr4:6641166|6641750 hsa-miR-6820-5p 1 0 0
chr4:6641166|6641750 hsa-miR-4474-3p 1 0 0
chr4:6641166|6641750 hsa-miR-197-5p 1 0 0
chr4:6641166|6641750 hsa-miR-8069 1 0 0
chr4:6641166|6641750 hsa-miR-3663-5p 1 0 0
chr4:6641166|6641750 hsa-miR-185-3p 1 0 0
chr4:6641166|6641750 hsa-miR-6770-5p 0 1 0
chr4:6641166|6641750 hsa-miR-6760-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6874-5p 1 1 0
chr4:6641166|6641750 hsa-miR-3150b-3p 1 0 0
chr4:6641166|6641750 hsa-miR-6888-5p 1 0 0
chr4:6641166|6641750 hsa-miR-5006-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6786-5p 1 0 0
chr4:6641166|6641750 hsa-miR-877-5p 1 0 0
chr4:6641166|6641750 hsa-miR-149-3p 1 0 0
chr4:6641166|6641750 hsa-miR-574-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6869-5p 1 0 0
chr4:6641166|6641750 hsa-miR-7152-3p 1 1 0
chr4:6641166|6641750 hsa-miR-4750-5p 1 0 0
chr4:6641166|6641750 hsa-miR-5197-3p 1 1 0
chr4:6641166|6641750 hsa-miR-1207-5p 1 1 0
chr4:6641166|6641750 hsa-miR-4763-3p 1 1 0
chr4:6641166|6641750 hsa-miR-6865-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6870-5p 1 0 0
chr4:6641166|6641750 hsa-miR-5001-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6726-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6754-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6756-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6803-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6815-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6851-5p 1 0 0
chr4:6641166|6641750 hsa-miR-1249-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6779-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6808-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6879-5p 1 0 0
chr4:6641166|6641750 hsa-miR-3620-5p 1 0 0
chr4:6641166|6641750 hsa-miR-10396a-5p 1 0 0
chr4:6641166|6641750 hsa-miR-10396b-5p 1 0 0
chr4:6641166|6641750 hsa-miR-4649-5p 1 0 0
chr4:6641166|6641750 hsa-miR-4745-3p 1 0 0
chr4:6641166|6641750 hsa-miR-6729-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6735-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6846-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6848-5p 1 0 0
chr4:6641166|6641750 hsa-miR-4723-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6831-5p 1 0 0
chr4:6641166|6641750 hsa-miR-939-5p 1 0 0
chr4:6641166|6641750 hsa-miR-4633-3p 1 0 0
chr4:6641166|6641750 hsa-miR-6758-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6856-5p 1 1 0
chr4:6641166|6641750 hsa-miR-3679-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6750-5p 1 0 0
chr4:6641166|6641750 hsa-miR-6849-5p 1 0 0
chr4:6641166|6641750 hsa-miR-9851-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr4:6641166|6641750
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MAGNRRPRSRRLALLYPPDQLHQHLCHLRNLLGLL
Nucleotide Sequence TTGGCTGGAAACCGCCGACCGCGCTCACGACGACTCGCTCTTCTCTATCCGCCGGACCAGCTCCACCAGCATCTCTGCCATCTTCGCAATCTCCTTGGCCTTCTC
CircID chr4:6641166|6641750
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence METADRAHDDSLFSIRRTSSTSISAIFAISLAF
Nucleotide Sequence CTGGAAACCGCCGACCGCGCTCACGACGACTCGCTCTTCTCTATCCGCCGGACCAGCTCCACCAGCATCTCTGCCATCTTCGCAATCTCCTTGGCCTTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab