CircRNA Information

General Information
circRNA Basic Information
CircID chr4:6709420|6709605
Strand -
CircType exon
Host Gene ENSG00000178988.10;
Algorism CIRI2;
Sequence CTGCGTTTTGATCTGGATAAGCATATTGTCCATCTCCCACAGCTTGCTCCTGGTCCGCAGGTACGCCCGCCCGTGCTCGCGTATAAGAGACGCGATGTCCTCGCGCATCTCGTTGATGACCGGGAGCAGGAACTGCTCGAAATCCTCCTCGGGCTCCAGCACCTCCACTTCCTCAGGCGCTTCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:6709420|6709605 hsa-miR-370-5p 0 0 1
chr4:6709420|6709605 hsa-miR-370-3p 0 0 1
chr4:6709420|6709605 hsa-miR-585-5p 0 0 1
chr4:6709420|6709605 hsa-miR-585-3p 0 0 1
chr4:6709420|6709605 hsa-miR-611 0 0 1
chr4:6709420|6709605 hsa-miR-1323 0 0 1
chr4:6709420|6709605 hsa-miR-665 0 1 1
chr4:6709420|6709605 hsa-miR-1287-5p 0 0 1
chr4:6709420|6709605 hsa-miR-1287-3p 0 0 1
chr4:6709420|6709605 hsa-miR-548o-3p 0 0 1
chr4:6709420|6709605 hsa-miR-548o 0 0 1
chr4:6709420|6709605 hsa-miR-671-5p 1 0 1
chr4:6709420|6709605 hsa-miR-338-5p 0 0 1
chr4:6709420|6709605 hsa-miR-876-5p 0 0 1
chr4:6709420|6709605 hsa-miR-151-5p 0 0 1
chr4:6709420|6709605 hsa-miR-637 1 0 0
chr4:6709420|6709605 hsa-miR-638 1 0 0
chr4:6709420|6709605 hsa-miR-544b 0 1 0
chr4:6709420|6709605 hsa-miR-4450 0 1 0
chr4:6709420|6709605 hsa-miR-3135b 0 1 0
chr4:6709420|6709605 hsa-miR-3689c 0 1 0
chr4:6709420|6709605 hsa-miR-4662b 0 1 0
chr4:6709420|6709605 hsa-miR-4706 1 0 0
chr4:6709420|6709605 hsa-miR-4754 0 1 0
chr4:6709420|6709605 hsa-miR-4767 0 1 0
chr4:6709420|6709605 hsa-miR-5572 1 0 0
chr4:6709420|6709605 hsa-miR-5787 1 0 0
chr4:6709420|6709605 hsa-miR-6078 0 1 0
chr4:6709420|6709605 hsa-miR-6090 1 0 0
chr4:6709420|6709605 hsa-miR-6127 1 0 0
chr4:6709420|6709605 hsa-miR-7706 1 1 0
chr4:6709420|6709605 hsa-miR-8089 1 0 0
chr4:6709420|6709605 hsa-miR-12114 1 0 0
chr4:6709420|6709605 hsa-miR-12115 0 1 0
chr4:6709420|6709605 hsa-miR-4433a-3p 1 0 0
chr4:6709420|6709605 hsa-miR-6825-5p 1 1 0
chr4:6709420|6709605 hsa-miR-6894-5p 1 1 0
chr4:6709420|6709605 hsa-miR-4687-3p 1 0 0
chr4:6709420|6709605 hsa-miR-6799-5p 1 0 0
chr4:6709420|6709605 hsa-miR-139-3p 1 0 0
chr4:6709420|6709605 hsa-miR-7847-3p 1 0 0
chr4:6709420|6709605 hsa-miR-30b-3p 0 1 0
chr4:6709420|6709605 hsa-miR-4640-5p 1 1 0
chr4:6709420|6709605 hsa-miR-550b-2-5p 1 0 0
chr4:6709420|6709605 hsa-miR-4776-5p 0 1 0
chr4:6709420|6709605 hsa-miR-6720-3p 1 1 0
chr4:6709420|6709605 hsa-miR-1288-5p 0 1 0
chr4:6709420|6709605 hsa-miR-1233-5p 1 1 0
chr4:6709420|6709605 hsa-miR-3689b-3p 0 1 0
chr4:6709420|6709605 hsa-miR-6778-5p 0 1 0
chr4:6709420|6709605 hsa-miR-1343-5p 1 0 0
chr4:6709420|6709605 hsa-miR-6726-5p 1 0 0
chr4:6709420|6709605 hsa-miR-6752-5p 1 1 0
chr4:6709420|6709605 hsa-miR-6803-5p 1 0 0
chr4:6709420|6709605 hsa-miR-6851-5p 1 1 0
chr4:6709420|6709605 hsa-miR-7110-5p 1 0 0
chr4:6709420|6709605 hsa-miR-6751-5p 1 0 0
chr4:6709420|6709605 hsa-miR-6779-5p 1 0 0
chr4:6709420|6709605 hsa-miR-1909-3p 1 0 0
chr4:6709420|6709605 hsa-miR-939-5p 1 0 0
chr4:6709420|6709605 hsa-miR-10394-3p 1 0 0
chr4:6709420|6709605 hsa-miR-30c-1-3p 0 1 0
chr4:6709420|6709605 hsa-miR-550a-3-5p 1 1 0
chr4:6709420|6709605 hsa-miR-550a-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr4:6709420|6709605
ORF Type ORF1
Protein Length 62
Nucleotide Length 186
Protein Sequence LRFDLDKHIVHLPQLAPGPQVRPPVLAYKRRDVLAHLVDDREQELLEILLGLQHLHFLRRFH
Nucleotide Sequence CTGCGTTTTGATCTGGATAAGCATATTGTCCATCTCCCACAGCTTGCTCCTGGTCCGCAGGTACGCCCGCCCGTGCTCGCGTATAAGAGACGCGATGTCCTCGCGCATCTCGTTGATGACCGGGAGCAGGAACTGCTCGAAATCCTCCTCGGGCTCCAGCACCTCCACTTCCTCAGGCGCTTCCAC

CircID chr4:6709420|6709605
ORF Type ORF2
Protein Length 59
Nucleotide Length 177
Protein Sequence MIWISILSISHSLLLVRRYARPCSRIRDAMSSRISLMTGSRNCSKSSSGSSTSTSSGAS
Nucleotide Sequence TTGATCTGGATAAGCATATTGTCCATCTCCCACAGCTTGCTCCTGGTCCGCAGGTACGCCCGCCCGTGCTCGCGTATAAGAGACGCGATGTCCTCGCGCATCTCGTTGATGACCGGGAGCAGGAACTGCTCGAAATCCTCCTCGGGCTCCAGCACCTCCACTTCCTCAGGCGCTTCC

CircID chr4:6709420|6709605
ORF Type ORF3
Protein Length 53
Nucleotide Length 159
Protein Sequence MEPEEDFEQFLLPVINEMREDIASLIREHGRAYLRTRSKLWEMDNMLIQIKTQ
Nucleotide Sequence CTGGAGCCCGAGGAGGATTTCGAGCAGTTCCTGCTCCCGGTCATCAACGAGATGCGCGAGGACATCGCGTCTCTTATACGCGAGCACGGGCGGGCGTACCTGCGGACCAGGAGCAAGCTGTGGGAGATGGACAATATGCTTATCCAGATCAAAACGCAG

CircID chr4:6709420|6709605
ORF Type ORF4
Protein Length 58
Nucleotide Length 174
Protein Sequence MRKWRCWSPRRISSSSCSRSSTRCARTSRLLYASTGGRTCGPGASCGRWTICLSRSKR
Nucleotide Sequence CTGAGGAAGTGGAGGTGCTGGAGCCCGAGGAGGATTTCGAGCAGTTCCTGCTCCCGGTCATCAACGAGATGCGCGAGGACATCGCGTCTCTTATACGCGAGCACGGGCGGGCGTACCTGCGGACCAGGAGCAAGCTGTGGGAGATGGACAATATGCTTATCCAGATCAAAACGC

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites