CircRNA Information

General Information
circRNA Basic Information
CircID chr4:675377|675528
Strand +
CircType exon
Host Gene ENSG00000215375.5;
Algorism CIRI2;
Sequence AGGTAGCCCAGGCCGCCAGGATCACGGGTCCTCCCCATGCTTGCTTCAAGAGTCCTGGAGTTTGTGATGCTGCACCTTAGCGAGACCCGAGCCATAGTTCTCCAGTTGCTTCTGCCTGTAGCAGTGCAGGGCCAGGAGGGGACACAGGAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:675377|675528 hsa-miR-18a-5p 0 0 1
chr4:675377|675528 hsa-miR-18a-3p 0 0 1
chr4:675377|675528 hsa-miR-107 0 1 1
chr4:675377|675528 hsa-miR-221-5p 0 0 1
chr4:675377|675528 hsa-miR-221-3p 0 0 1
chr4:675377|675528 hsa-miR-222-5p 0 0 1
chr4:675377|675528 hsa-miR-222-3p 0 0 1
chr4:675377|675528 hsa-miR-146a-5p 0 0 1
chr4:675377|675528 hsa-miR-146a-3p 0 0 1
chr4:675377|675528 hsa-miR-328-5p 0 0 1
chr4:675377|675528 hsa-miR-328-3p 0 0 1
chr4:675377|675528 hsa-miR-135b-5p 0 0 1
chr4:675377|675528 hsa-miR-135b-3p 0 0 1
chr4:675377|675528 hsa-miR-18b-5p 0 0 1
chr4:675377|675528 hsa-miR-18b-3p 0 0 1
chr4:675377|675528 hsa-miR-661 0 0 1
chr4:675377|675528 hsa-miR-298 0 1 1
chr4:675377|675528 hsa-miR-665 0 0 1
chr4:675377|675528 hsa-miR-939-5p 0 0 1
chr4:675377|675528 hsa-miR-939-3p 0 0 1
chr4:675377|675528 hsa-miR-1234-3p 0 0 1
chr4:675377|675528 hsa-miR-1291 0 1 1
chr4:675377|675528 hsa-miR-1234 0 0 1
chr4:675377|675528 hsa-miR-127-5p 0 0 1
chr4:675377|675528 hsa-miR-508-5p 0 0 1
chr4:675377|675528 hsa-miR-146b-5p 0 0 1
chr4:675377|675528 hsa-miR-103 0 0 1
chr4:675377|675528 hsa-miR-135a 0 0 1
chr4:675377|675528 hsa-miR-720 0 0 1
chr4:675377|675528 hsa-miR-2861 1 0 0
chr4:675377|675528 hsa-miR-3657 0 1 0
chr4:675377|675528 hsa-miR-3909 1 0 0
chr4:675377|675528 hsa-miR-4673 1 0 0
chr4:675377|675528 hsa-miR-4751 0 1 0
chr4:675377|675528 hsa-miR-8089 1 0 0
chr4:675377|675528 hsa-miR-3150a-3p 0 1 0
chr4:675377|675528 hsa-miR-7106-5p 0 1 0
chr4:675377|675528 hsa-miR-4655-5p 1 0 0
chr4:675377|675528 hsa-miR-432-5p 0 1 0
chr4:675377|675528 hsa-miR-2467-3p 1 0 0
chr4:675377|675528 hsa-miR-4793-3p 0 1 0
chr4:675377|675528 hsa-miR-4786-3p 1 0 0
chr4:675377|675528 hsa-miR-4690-5p 1 0 0
chr4:675377|675528 hsa-miR-103a-3p 0 1 0
chr4:675377|675528 hsa-miR-4667-3p 0 1 0
chr4:675377|675528 hsa-miR-526b-5p 0 1 0
chr4:675377|675528 hsa-miR-660-3p 0 1 0
chr4:675377|675528 hsa-miR-7112-3p 0 1 0
chr4:675377|675528 hsa-miR-6826-3p 0 1 0
chr4:675377|675528 hsa-miR-4749-3p 1 0 0
chr4:675377|675528 hsa-miR-3173-5p 0 1 0
chr4:675377|675528 hsa-miR-4763-3p 1 0 0
chr4:675377|675528 hsa-miR-1343-5p 1 0 0
chr4:675377|675528 hsa-miR-6756-5p 1 0 0
chr4:675377|675528 hsa-miR-7107-5p 0 1 0
chr4:675377|675528 hsa-miR-3127-3p 1 0 0
chr4:675377|675528 hsa-miR-4685-3p 1 0 0
chr4:675377|675528 hsa-miR-4685-5p 1 1 0
chr4:675377|675528 hsa-miR-1910-3p 0 1 0
chr4:675377|675528 hsa-miR-6511a-5p 0 1 0
chr4:675377|675528 hsa-miR-6511b-5p 0 1 0
chr4:675377|675528 hsa-miR-6799-3p 0 1 0
chr4:675377|675528 hsa-miR-6855-5p 1 0 0
chr4:675377|675528 hsa-miR-6791-3p 0 1 0
chr4:675377|675528 hsa-miR-7151-3p 0 1 0
chr4:675377|675528 hsa-miR-6829-3p 0 1 0
chr4:675377|675528 hsa-miR-6775-3p 0 1 0
chr4:675377|675528 hsa-miR-4691-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:675377|675528
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MLASRVLEFVMLHLSETRAIVLQLLLPVAVQGQEGTQE
Nucleotide Sequence ATGCTTGCTTCAAGAGTCCTGGAGTTTGTGATGCTGCACCTTAGCGAGACCCGAGCCATAGTTCTCCAGTTGCTTCTGCCTGTAGCAGTGCAGGGCCAGGAGGGGACACAGGAG
CircID chr4:675377|675528
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MARVSLRCSITNSRTLEASMGRTRDPGGLGY
Nucleotide Sequence ATGGCTCGGGTCTCGCTAAGGTGCAGCATCACAAACTCCAGGACTCTTGAAGCAAGCATGGGGAGGACCCGTGATCCTGGCGGCCTGGGCTAC
CircID chr4:675377|675528
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MCPLLALHCYRQKQLENYGSGLAKVQHHKLQDS
Nucleotide Sequence CTGTGTCCCCTCCTGGCCCTGCACTGCTACAGGCAGAAGCAACTGGAGAACTATGGCTCGGGTCTCGCTAAGGTGCAGCATCACAAACTCCAGGACTCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab