CircRNA Information

General Information
circRNA Basic Information
CircID chr4:75012498|75012613
Strand -
CircType exon
Host Gene ENSG00000169116.10;
Algorism CIRI2;
Sequence CACCATCTGGACTAGCTCTCCACAAAACACTGATGCAGACACTGCCTCCCCATCCAACGGCACTCACAACAACTCGGTGCTCCCAGTTACAGCATCAGCCCCAACATCTCTGCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:75012498|75012613 hsa-miR-198 0 0 1
chr4:75012498|75012613 hsa-miR-34a-5p 0 0 1
chr4:75012498|75012613 hsa-miR-34a-3p 0 0 1
chr4:75012498|75012613 hsa-miR-185-5p 0 0 1
chr4:75012498|75012613 hsa-miR-185-3p 0 0 1
chr4:75012498|75012613 hsa-miR-346 0 0 1
chr4:75012498|75012613 hsa-miR-449a 0 1 1
chr4:75012498|75012613 hsa-miR-554 0 0 1
chr4:75012498|75012613 hsa-miR-632 0 1 1
chr4:75012498|75012613 hsa-miR-650 0 1 1
chr4:75012498|75012613 hsa-miR-449b-5p 0 0 1
chr4:75012498|75012613 hsa-miR-449b-3p 0 0 1
chr4:75012498|75012613 hsa-miR-920 0 0 1
chr4:75012498|75012613 hsa-miR-939-5p 0 0 1
chr4:75012498|75012613 hsa-miR-939-3p 0 0 1
chr4:75012498|75012613 hsa-miR-1827 0 0 1
chr4:75012498|75012613 hsa-miR-34c-5p 0 1 1
chr4:75012498|75012613 hsa-miR-582-3p 0 0 1
chr4:75012498|75012613 hsa-miR-371-3p 0 0 1
chr4:75012498|75012613 hsa-miR-608 1 0 0
chr4:75012498|75012613 hsa-miR-658 1 0 0
chr4:75012498|75012613 hsa-miR-762 1 0 0
chr4:75012498|75012613 hsa-miR-3137 1 1 0
chr4:75012498|75012613 hsa-miR-3978 1 0 0
chr4:75012498|75012613 hsa-miR-4692 1 1 0
chr4:75012498|75012613 hsa-miR-4706 1 0 0
chr4:75012498|75012613 hsa-miR-5192 0 1 0
chr4:75012498|75012613 hsa-miR-5698 0 1 0
chr4:75012498|75012613 hsa-miR-6085 1 0 0
chr4:75012498|75012613 hsa-miR-6090 1 0 0
chr4:75012498|75012613 hsa-miR-8086 0 1 0
chr4:75012498|75012613 hsa-miR-8089 1 0 0
chr4:75012498|75012613 hsa-miR-6734-5p 1 0 0
chr4:75012498|75012613 hsa-miR-6825-5p 1 1 0
chr4:75012498|75012613 hsa-miR-4687-3p 1 0 0
chr4:75012498|75012613 hsa-miR-7851-3p 1 0 0
chr4:75012498|75012613 hsa-miR-4695-5p 1 0 0
chr4:75012498|75012613 hsa-miR-6741-5p 1 0 0
chr4:75012498|75012613 hsa-miR-6759-5p 1 0 0
chr4:75012498|75012613 hsa-miR-3180-3p 1 0 0
chr4:75012498|75012613 hsa-miR-6793-5p 1 0 0
chr4:75012498|75012613 hsa-miR-1226-5p 1 0 0
chr4:75012498|75012613 hsa-miR-4738-3p 1 0 0
chr4:75012498|75012613 hsa-miR-1909-5p 1 1 0
chr4:75012498|75012613 hsa-let-7g-5p 0 1 0
chr4:75012498|75012613 hsa-miR-6733-3p 0 1 0
chr4:75012498|75012613 hsa-miR-6769b-5p 1 0 0
chr4:75012498|75012613 hsa-miR-6726-5p 1 0 0
chr4:75012498|75012613 hsa-miR-6756-5p 1 0 0
chr4:75012498|75012613 hsa-miR-6803-5p 1 0 0
chr4:75012498|75012613 hsa-miR-6751-5p 1 0 0
chr4:75012498|75012613 hsa-miR-3620-5p 0 1 0
chr4:75012498|75012613 hsa-miR-328-5p 1 0 0
chr4:75012498|75012613 hsa-miR-449c-5p 0 1 0
chr4:75012498|75012613 hsa-miR-6795-5p 1 0 0
chr4:75012498|75012613 hsa-miR-6846-5p 1 0 0
chr4:75012498|75012613 hsa-miR-6848-5p 1 0 0
chr4:75012498|75012613 hsa-miR-1238-5p 1 0 0
chr4:75012498|75012613 hsa-miR-4758-5p 1 0 0
chr4:75012498|75012613 hsa-miR-10394-3p 1 0 0
chr4:75012498|75012613 hsa-miR-34b-5p 0 1 0
chr4:75012498|75012613 hsa-miR-6511a-5p 1 1 0
chr4:75012498|75012613 hsa-miR-6731-5p 1 0 0
chr4:75012498|75012613 hsa-miR-6785-5p 1 0 0
chr4:75012498|75012613 hsa-miR-6790-5p 1 0 0
chr4:75012498|75012613 hsa-miR-2682-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:75012498|75012613
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MMQTLPPHPTALTTTRCSQLQHQPQHLCF
Nucleotide Sequence CTGATGCAGACACTGCCTCCCCATCCAACGGCACTCACAACAACTCGGTGCTCCCAGTTACAGCATCAGCCCCAACATCTCTGCTTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab