CircRNA Information

General Information
circRNA Basic Information
CircID chr4:76002487|76002615
Strand -
CircType exon
Host Gene ENSG00000138755.5;
Algorism CIRI2;
Sequence CTGCTCTGAGACAATGGTCTGGTTGCCATCCTGCCCATAACAACATCAATTAAAAAATTATTAAAACCTAGTTCCACAGTATTATTAGGCACTGTGGAAGAAACAGGGAAATATACTGTGGCTCTTGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:76002487|76002615 hsa-miR-31-5p 0 0 1
chr4:76002487|76002615 hsa-miR-31-3p 0 0 1
chr4:76002487|76002615 hsa-miR-200b-5p 0 0 1
chr4:76002487|76002615 hsa-miR-200b-3p 0 0 1
chr4:76002487|76002615 hsa-miR-144-5p 0 0 1
chr4:76002487|76002615 hsa-miR-144-3p 0 0 1
chr4:76002487|76002615 hsa-miR-200c-5p 0 0 1
chr4:76002487|76002615 hsa-miR-200c-3p 0 0 1
chr4:76002487|76002615 hsa-miR-335-5p 0 0 1
chr4:76002487|76002615 hsa-miR-335-3p 0 0 1
chr4:76002487|76002615 hsa-miR-429 0 0 1
chr4:76002487|76002615 hsa-miR-519e-5p 0 0 1
chr4:76002487|76002615 hsa-miR-519e-3p 0 0 1
chr4:76002487|76002615 hsa-miR-892a 0 0 1
chr4:76002487|76002615 hsa-miR-339-5p 0 0 1
chr4:76002487|76002615 hsa-miR-515-3p 0 0 1
chr4:76002487|76002615 hsa-miR-590-3p 0 0 1
chr4:76002487|76002615 hsa-miR-369-3p 0 0 1
chr4:76002487|76002615 hsa-miR-1274a 0 0 1
chr4:76002487|76002615 hsa-miR-128 0 0 1
chr4:76002487|76002615 hsa-miR-1274b 0 0 1
chr4:76002487|76002615 hsa-miR-4748 1 0 0
chr4:76002487|76002615 hsa-miR-6860 1 0 0
chr4:76002487|76002615 hsa-miR-432-3p 1 0 0
chr4:76002487|76002615 hsa-miR-6861-5p 1 0 0
chr4:76002487|76002615 hsa-miR-6894-5p 1 0 0
chr4:76002487|76002615 hsa-miR-4722-5p 1 0 0
chr4:76002487|76002615 hsa-miR-6721-5p 1 0 0
chr4:76002487|76002615 hsa-miR-1229-5p 1 0 0
chr4:76002487|76002615 hsa-miR-193b-5p 1 0 0
chr4:76002487|76002615 hsa-miR-1228-5p 1 0 0
chr4:76002487|76002615 hsa-miR-1207-5p 1 0 0
chr4:76002487|76002615 hsa-miR-4763-3p 1 0 0
chr4:76002487|76002615 hsa-miR-5001-5p 1 0 0
chr4:76002487|76002615 hsa-miR-6743-5p 1 0 0
chr4:76002487|76002615 hsa-miR-3620-5p 1 0 0
chr4:76002487|76002615 hsa-miR-4436b-3p 1 0 0
chr4:76002487|76002615 hsa-miR-4747-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:76002487|76002615
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MVAILPITTSIKKLLKPSSTVLLGTVEETGKYTVALA
Nucleotide Sequence CTGGTTGCCATCCTGCCCATAACAACATCAATTAAAAAATTATTAAAACCTAGTTCCACAGTATTATTAGGCACTGTGGAAGAAACAGGGAAATATACTGTGGCTCTTGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab