CircRNA Information

General Information
circRNA Basic Information
CircID chr4:77048397|77048551
Strand +
CircType exon
Host Gene ENSG00000118816.8;
Algorism CIRI2;
Sequence ACCCTGGTGACCTGTGACAAAGGAGTGTTCAGATTACATCCCTCCTCTGTCCCAGGCCCAGACTTCTCCAAGGACAACAGCAAGCCAGAAGTGCCAGTCAGAGGTACAGCAGCCTTTTACCATCATCTCCCAGCTGCCAGTGGGTGCAAGCAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:77048397|77048551 hsa-miR-143-5p 0 0 1
chr4:77048397|77048551 hsa-miR-143-3p 0 0 1
chr4:77048397|77048551 hsa-miR-149-5p 0 0 1
chr4:77048397|77048551 hsa-miR-149-3p 0 0 1
chr4:77048397|77048551 hsa-miR-380-5p 0 0 1
chr4:77048397|77048551 hsa-miR-380-3p 0 0 1
chr4:77048397|77048551 hsa-miR-345-5p 0 0 1
chr4:77048397|77048551 hsa-miR-345-3p 0 0 1
chr4:77048397|77048551 hsa-miR-432-5p 0 0 1
chr4:77048397|77048551 hsa-miR-432-3p 0 0 1
chr4:77048397|77048551 hsa-miR-612 1 0 1
chr4:77048397|77048551 hsa-miR-620 0 0 1
chr4:77048397|77048551 hsa-miR-661 0 0 1
chr4:77048397|77048551 hsa-miR-1226-5p 0 0 1
chr4:77048397|77048551 hsa-miR-1226-3p 0 0 1
chr4:77048397|77048551 hsa-miR-1270 0 1 1
chr4:77048397|77048551 hsa-miR-885-3p 1 0 1
chr4:77048397|77048551 hsa-miR-1207-3p 0 0 1
chr4:77048397|77048551 hsa-miR-513a-5p 0 0 1
chr4:77048397|77048551 hsa-miR-483-3p 0 0 1
chr4:77048397|77048551 hsa-miR-1302 0 0 1
chr4:77048397|77048551 hsa-miR-220c 0 0 1
chr4:77048397|77048551 hsa-miR-1285 0 0 1
chr4:77048397|77048551 hsa-miR-637 1 0 0
chr4:77048397|77048551 hsa-miR-646 1 0 0
chr4:77048397|77048551 hsa-miR-1275 1 0 0
chr4:77048397|77048551 hsa-miR-2861 1 1 0
chr4:77048397|77048551 hsa-miR-3122 0 1 0
chr4:77048397|77048551 hsa-miR-4298 1 1 0
chr4:77048397|77048551 hsa-miR-3937 1 0 0
chr4:77048397|77048551 hsa-miR-1268b 1 0 0
chr4:77048397|77048551 hsa-miR-378g 0 1 0
chr4:77048397|77048551 hsa-miR-4498 1 0 0
chr4:77048397|77048551 hsa-miR-4505 1 0 0
chr4:77048397|77048551 hsa-miR-4525 1 0 0
chr4:77048397|77048551 hsa-miR-4526 1 0 0
chr4:77048397|77048551 hsa-miR-4706 1 0 0
chr4:77048397|77048551 hsa-miR-4718 0 1 0
chr4:77048397|77048551 hsa-miR-5703 0 1 0
chr4:77048397|77048551 hsa-miR-5787 1 0 0
chr4:77048397|77048551 hsa-miR-6088 0 1 0
chr4:77048397|77048551 hsa-miR-7150 1 0 0
chr4:77048397|77048551 hsa-miR-8072 1 0 0
chr4:77048397|77048551 hsa-miR-8073 1 1 0
chr4:77048397|77048551 hsa-miR-8085 1 0 0
chr4:77048397|77048551 hsa-miR-8089 1 0 0
chr4:77048397|77048551 hsa-miR-12122 0 1 0
chr4:77048397|77048551 hsa-miR-12131 0 1 0
chr4:77048397|77048551 hsa-miR-4687-3p 1 0 0
chr4:77048397|77048551 hsa-miR-6799-5p 1 0 0
chr4:77048397|77048551 hsa-miR-7851-3p 1 0 0
chr4:77048397|77048551 hsa-miR-3192-5p 0 1 0
chr4:77048397|77048551 hsa-miR-6762-3p 0 1 0
chr4:77048397|77048551 hsa-miR-7845-5p 1 1 0
chr4:77048397|77048551 hsa-miR-30b-3p 1 0 0
chr4:77048397|77048551 hsa-miR-6740-5p 1 1 0
chr4:77048397|77048551 hsa-miR-4640-5p 1 0 0
chr4:77048397|77048551 hsa-miR-30c-2-3p 1 0 0
chr4:77048397|77048551 hsa-miR-3691-5p 1 0 0
chr4:77048397|77048551 hsa-miR-6749-5p 1 1 0
chr4:77048397|77048551 hsa-miR-6847-5p 0 1 0
chr4:77048397|77048551 hsa-miR-194-3p 1 0 0
chr4:77048397|77048551 hsa-miR-2355-3p 0 1 0
chr4:77048397|77048551 hsa-miR-584-5p 1 0 0
chr4:77048397|77048551 hsa-miR-10400-5p 1 0 0
chr4:77048397|77048551 hsa-miR-1273h-5p 1 0 0
chr4:77048397|77048551 hsa-miR-6726-5p 1 0 0
chr4:77048397|77048551 hsa-miR-6743-5p 1 0 0
chr4:77048397|77048551 hsa-miR-6851-5p 1 0 0
chr4:77048397|77048551 hsa-miR-7107-5p 1 1 0
chr4:77048397|77048551 hsa-miR-1249-5p 0 1 0
chr4:77048397|77048551 hsa-miR-6779-5p 1 0 0
chr4:77048397|77048551 hsa-miR-6788-5p 1 1 0
chr4:77048397|77048551 hsa-miR-6797-5p 1 1 0
chr4:77048397|77048551 hsa-miR-7111-5p 1 0 0
chr4:77048397|77048551 hsa-miR-4728-5p 1 0 0
chr4:77048397|77048551 hsa-miR-6780b-5p 0 1 0
chr4:77048397|77048551 hsa-miR-6846-5p 1 0 0
chr4:77048397|77048551 hsa-miR-6848-5p 1 0 0
chr4:77048397|77048551 hsa-miR-6858-5p 1 0 0
chr4:77048397|77048551 hsa-miR-6883-5p 0 1 0
chr4:77048397|77048551 hsa-miR-30c-1-3p 1 1 0
chr4:77048397|77048551 hsa-miR-6731-5p 1 0 0
chr4:77048397|77048551 hsa-miR-3116 0 1 0
chr4:77048397|77048551 hsa-miR-4646-5p 1 0 0
chr4:77048397|77048551 hsa-miR-6724-5p 1 0 0
chr4:77048397|77048551 hsa-miR-6791-5p 1 0 0
chr4:77048397|77048551 hsa-miR-9851-5p 1 1 0
chr4:77048397|77048551 hsa-miR-323b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:77048397|77048551
ORF Type ORF1
Protein Length 50
Nucleotide Length 150
Protein Sequence MVTCDKGVFRLHPSSVPGPDFSKDNSKPEVPVRGTAAFYHHLPAASGCKQ
Nucleotide Sequence CTGGTGACCTGTGACAAAGGAGTGTTCAGATTACATCCCTCCTCTGTCCCAGGCCCAGACTTCTCCAAGGACAACAGCAAGCCAGAAGTGCCAGTCAGAGGTACAGCAGCCTTTTACCATCATCTCCCAGCTGCCAGTGGGTGCAAGCAG
CircID chr4:77048397|77048551
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MSQAQTSPRTTASQKCQSEVQQPFTIISQLPVGASR
Nucleotide Sequence CTGTCCCAGGCCCAGACTTCTCCAAGGACAACAGCAAGCCAGAAGTGCCAGTCAGAGGTACAGCAGCCTTTTACCATCATCTCCCAGCTGCCAGTGGGTGCAAGCAGA
CircID chr4:77048397|77048551
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MTGTSGLLLSLEKSGPGTEEGCNLNTPLSQVTR
Nucleotide Sequence CTGACTGGCACTTCTGGCTTGCTGTTGTCCTTGGAGAAGTCTGGGCCTGGGACAGAGGAGGGATGTAATCTGAACACTCCTTTGTCACAGGTCACCAGG
CircID chr4:77048397|77048551
ORF Type ORF4
Protein Length 39
Nucleotide Length 120
Protein Sequence LLAPTGSWEMMVKGCCTSDWHFWLAVVLGEVWAWDRGGM
Nucleotide Sequence CTGCTTGCACCCACTGGCAGCTGGGAGATGATGGTAAAAGGCTGCTGTACCTCTGACTGGCACTTCTGGCTTGCTGTTGTCCTTGGAGAAGTCTGGGCCTGGGACAGAGGAGGGATGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab