CircRNA Information

General Information
circRNA Basic Information
CircID chr4:774571|774975
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTTCGTGGTGAGTGTTACGGCTCTTAAGGTGGTGCGTCTGGAGTTGTTCATTCTTCCCACTGGGTTCGTGGTCTCGATGGCTCAGGAGTGAAGCTGTGGACTTTCGCGGTGAGTGTTACGGCTCTTAAGGTGCTGTGTCTGGAGTTGTTCATTCTTCCCACTGGGTTCATGGTCTCGATGGCTCAGGAGTGAAGCTGCAGACCTTCGTGGTGAGTGTTACGGCTCTTAAGGTGGCGCGTCTGGAGTTGTTCATTCTTCCCACTGGGTCCGTGGTCTCGATGGCTCAGGAGTGAAGCTGCAGACCTTCGTGGTGAGTCTTAACAGCTCTTAAGGTTTCGCGTCTGGAGTTATTCATTCTTCCCACTGCGTCTGTGGTCTCGATGGCTCAGGAGTGAAGCTGCAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:774571|774975 hsa-miR-197-5p 0 0 1
chr4:774571|774975 hsa-miR-197-3p 0 0 1
chr4:774571|774975 hsa-miR-208a-5p 0 0 1
chr4:774571|774975 hsa-miR-208a-3p 0 0 1
chr4:774571|774975 hsa-miR-141-5p 0 0 1
chr4:774571|774975 hsa-miR-141-3p 0 0 1
chr4:774571|774975 hsa-miR-200a-5p 0 0 1
chr4:774571|774975 hsa-miR-200a-3p 0 0 1
chr4:774571|774975 hsa-miR-493-5p 0 0 1
chr4:774571|774975 hsa-miR-493-3p 0 0 1
chr4:774571|774975 hsa-miR-591 0 0 1
chr4:774571|774975 hsa-miR-1301-5p 0 0 1
chr4:774571|774975 hsa-miR-1301-3p 0 0 1
chr4:774571|774975 hsa-miR-208b-5p 0 0 1
chr4:774571|774975 hsa-miR-208b-3p 0 0 1
chr4:774571|774975 hsa-miR-1200 1 1 1
chr4:774571|774975 hsa-miR-1205 0 0 1
chr4:774571|774975 hsa-miR-1184 0 1 1
chr4:774571|774975 hsa-miR-508-5p 0 1 1
chr4:774571|774975 hsa-miR-140-3p 0 0 1
chr4:774571|774975 hsa-miR-483-3p 0 1 1
chr4:774571|774975 hsa-miR-220b 0 0 1
chr4:774571|774975 hsa-miR-499-5p 0 0 1
chr4:774571|774975 hsa-miR-711 0 1 0
chr4:774571|774975 hsa-miR-4527 0 1 0
chr4:774571|774975 hsa-miR-5047 0 1 0
chr4:774571|774975 hsa-miR-5087 0 1 0
chr4:774571|774975 hsa-miR-181a-3p 0 1 0
chr4:774571|774975 hsa-miR-128-1-5p 0 1 0
chr4:774571|774975 hsa-miR-4786-5p 1 1 0
chr4:774571|774975 hsa-miR-6807-5p 0 1 0
chr4:774571|774975 hsa-miR-4715-3p 1 1 0
chr4:774571|774975 hsa-miR-3202 0 1 0
chr4:774571|774975 hsa-miR-194-3p 0 1 0
chr4:774571|774975 hsa-miR-3180-5p 1 1 0
chr4:774571|774975 hsa-miR-4727-3p 0 1 0
chr4:774571|774975 hsa-miR-517-5p 0 1 0
chr4:774571|774975 hsa-miR-1233-5p 1 0 0
chr4:774571|774975 hsa-miR-6778-5p 0 1 0
chr4:774571|774975 hsa-miR-6780a-5p 0 1 0
chr4:774571|774975 hsa-miR-1199-5p 1 1 0
chr4:774571|774975 hsa-miR-7107-3p 0 1 0
chr4:774571|774975 hsa-miR-6511a-3p 0 1 0
chr4:774571|774975 hsa-miR-6529-5p 1 0 0
chr4:774571|774975 hsa-miR-6511b-3p 0 1 0
chr4:774571|774975 hsa-miR-6503-5p 0 1 0
chr4:774571|774975 hsa-miR-4482-5p 0 1 0
chr4:774571|774975 hsa-miR-521 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:774571|774975
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MWTFAVSVTALKVLCLELFILPTGFMVSMAQE
Nucleotide Sequence CTGTGGACTTTCGCGGTGAGTGTTACGGCTCTTAAGGTGCTGTGTCTGGAGTTGTTCATTCTTCCCACTGGGTTCATGGTCTCGATGGCTCAGGAGTGA
CircID chr4:774571|774975
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MQTFVVSVTALKVARLELFILPTGSVVSMAQE
Nucleotide Sequence CTGCAGACCTTCGTGGTGAGTGTTACGGCTCTTAAGGTGGCGCGTCTGGAGTTGTTCATTCTTCCCACTGGGTCCGTGGTCTCGATGGCTCAGGAGTGA
CircID chr4:774571|774975
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MSHRDHEPSGKNEQLQTQHLKSRNTHRESPQLHS
Nucleotide Sequence CTGAGCCATCGAGACCATGAACCCAGTGGGAAGAATGAACAACTCCAGACACAGCACCTTAAGAGCCGTAACACTCACCGCGAAAGTCCACAGCTTCACTCCTGA
CircID chr4:774571|774975
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MSHRDHGPSGKNEQLQTRHLKSRNTHHEGLQLHS
Nucleotide Sequence CTGAGCCATCGAGACCACGGACCCAGTGGGAAGAATGAACAACTCCAGACGCGCCACCTTAAGAGCCGTAACACTCACCACGAAGGTCTGCAGCTTCACTCCTGA
CircID chr4:774571|774975
ORF Type ORF5
Protein Length 40
Nucleotide Length 123
Protein Sequence MNPVGRMNNSRHSTLRAVTLTAKVHSFTPEPSRPRTQWEE
Nucleotide Sequence ATGAACCCAGTGGGAAGAATGAACAACTCCAGACACAGCACCTTAAGAGCCGTAACACTCACCGCGAAAGTCCACAGCTTCACTCCTGAGCCATCGAGACCACGAACCCAGTGGGAAGAATGA
CircID chr4:774571|774975
ORF Type ORF6
Protein Length 28
Nucleotide Length 87
Protein Sequence MNNSRRATLRAVTLTTKVCSFTPEPSRP
Nucleotide Sequence ATGAACAACTCCAGACGCGCCACCTTAAGAGCCGTAACACTCACCACGAAGGTCTGCAGCTTCACTCCTGAGCCATCGAGACCATGA
CircID chr4:774571|774975
ORF Type ORF7
Protein Length 28
Nucleotide Length 84
Protein Sequence MSHRDHEPSGKNEQLQTHHLKSRNTHHE
Nucleotide Sequence CTGAGCCATCGAGACCACGAACCCAGTGGGAAGAATGAACAACTCCAGACGCACCACCTTAAGAGCCGTAACACTCACCACGAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab