CircRNA Information

General Information
circRNA Basic Information
CircID chr4:7771661|7771825
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCAACCCAGAGGACAACCTCCCTCCCGCCTGCAGAGCTGAGCAAGCAGCCAGGTCACTGCTCTGTCCCCAAACCACAAACCCAGCCACTCATGCATGGTTCTTTCAGGTGTTCAAGAGGTGGCTCTGGGGTCACACAGGCCAGGGCTTGAAATGACTTGACTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:7771661|7771825 hsa-miR-326 0 0 1
chr4:7771661|7771825 hsa-miR-498-5p 0 0 1
chr4:7771661|7771825 hsa-miR-498-3p 0 0 1
chr4:7771661|7771825 hsa-miR-604 0 0 1
chr4:7771661|7771825 hsa-miR-629-5p 0 0 1
chr4:7771661|7771825 hsa-miR-629-3p 0 0 1
chr4:7771661|7771825 hsa-miR-631 0 0 1
chr4:7771661|7771825 hsa-miR-647 0 1 1
chr4:7771661|7771825 hsa-miR-1178-5p 0 0 1
chr4:7771661|7771825 hsa-miR-1178-3p 0 0 1
chr4:7771661|7771825 hsa-miR-1205 0 0 1
chr4:7771661|7771825 hsa-miR-1321 0 0 1
chr4:7771661|7771825 hsa-miR-1184 0 0 1
chr4:7771661|7771825 hsa-miR-330-5p 0 0 1
chr4:7771661|7771825 hsa-miR-548b-3p 0 0 1
chr4:7771661|7771825 hsa-miR-453 0 0 1
chr4:7771661|7771825 hsa-miR-637 1 0 0
chr4:7771661|7771825 hsa-miR-661 1 0 0
chr4:7771661|7771825 hsa-miR-658 1 0 0
chr4:7771661|7771825 hsa-miR-762 1 0 0
chr4:7771661|7771825 hsa-miR-1231 1 0 0
chr4:7771661|7771825 hsa-miR-2278 0 1 0
chr4:7771661|7771825 hsa-miR-2861 1 0 0
chr4:7771661|7771825 hsa-miR-3141 1 0 0
chr4:7771661|7771825 hsa-miR-3175 1 0 0
chr4:7771661|7771825 hsa-miR-3176 0 1 0
chr4:7771661|7771825 hsa-miR-4259 1 0 0
chr4:7771661|7771825 hsa-miR-3652 1 0 0
chr4:7771661|7771825 hsa-miR-3661 0 1 0
chr4:7771661|7771825 hsa-miR-3909 0 1 0
chr4:7771661|7771825 hsa-miR-4425 1 0 0
chr4:7771661|7771825 hsa-miR-4430 1 0 0
chr4:7771661|7771825 hsa-miR-4481 1 0 0
chr4:7771661|7771825 hsa-miR-4505 1 0 0
chr4:7771661|7771825 hsa-miR-4533 1 0 0
chr4:7771661|7771825 hsa-miR-4688 1 0 0
chr4:7771661|7771825 hsa-miR-4748 1 0 0
chr4:7771661|7771825 hsa-miR-5087 1 1 0
chr4:7771661|7771825 hsa-miR-5090 1 0 0
chr4:7771661|7771825 hsa-miR-5190 0 1 0
chr4:7771661|7771825 hsa-miR-5572 1 0 0
chr4:7771661|7771825 hsa-miR-5705 1 0 0
chr4:7771661|7771825 hsa-miR-5787 1 0 0
chr4:7771661|7771825 hsa-miR-6081 1 0 0
chr4:7771661|7771825 hsa-miR-6085 1 0 0
chr4:7771661|7771825 hsa-miR-6086 1 0 0
chr4:7771661|7771825 hsa-miR-6090 1 0 0
chr4:7771661|7771825 hsa-miR-6127 1 0 0
chr4:7771661|7771825 hsa-miR-6133 1 1 0
chr4:7771661|7771825 hsa-miR-8072 1 0 0
chr4:7771661|7771825 hsa-miR-8085 1 0 0
chr4:7771661|7771825 hsa-miR-8089 1 1 0
chr4:7771661|7771825 hsa-miR-4433b-3p 1 0 0
chr4:7771661|7771825 hsa-miR-92a-1-5p 1 0 0
chr4:7771661|7771825 hsa-miR-4731-5p 1 0 0
chr4:7771661|7771825 hsa-miR-4433a-3p 1 0 0
chr4:7771661|7771825 hsa-miR-6861-5p 1 0 0
chr4:7771661|7771825 hsa-miR-7106-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6825-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6857-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6799-5p 1 0 0
chr4:7771661|7771825 hsa-miR-1227-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6746-5p 1 0 0
chr4:7771661|7771825 hsa-miR-3064-5p 0 1 0
chr4:7771661|7771825 hsa-miR-3677-5p 1 0 0
chr4:7771661|7771825 hsa-miR-24-3p 0 1 0
chr4:7771661|7771825 hsa-miR-6762-3p 0 1 0
chr4:7771661|7771825 hsa-miR-6727-5p 1 0 0
chr4:7771661|7771825 hsa-miR-4474-3p 1 0 0
chr4:7771661|7771825 hsa-miR-3622b-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6842-3p 1 0 0
chr4:7771661|7771825 hsa-miR-874-3p 0 1 0
chr4:7771661|7771825 hsa-miR-5589-5p 1 0 0
chr4:7771661|7771825 hsa-miR-7845-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6787-3p 0 1 0
chr4:7771661|7771825 hsa-miR-6748-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6793-5p 0 1 0
chr4:7771661|7771825 hsa-miR-6810-5p 1 1 0
chr4:7771661|7771825 hsa-miR-6735-3p 0 1 0
chr4:7771661|7771825 hsa-miR-7109-5p 1 0 0
chr4:7771661|7771825 hsa-miR-1226-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6740-5p 0 1 0
chr4:7771661|7771825 hsa-miR-2277-3p 1 0 0
chr4:7771661|7771825 hsa-miR-149-3p 1 0 0
chr4:7771661|7771825 hsa-miR-450a-2-3p 0 1 0
chr4:7771661|7771825 hsa-miR-490-3p 1 0 0
chr4:7771661|7771825 hsa-miR-3191-3p 1 0 0
chr4:7771661|7771825 hsa-miR-6811-3p 0 1 0
chr4:7771661|7771825 hsa-miR-2355-3p 0 1 0
chr4:7771661|7771825 hsa-miR-6818-5p 0 1 0
chr4:7771661|7771825 hsa-miR-34a-5p 1 1 0
chr4:7771661|7771825 hsa-miR-4766-5p 0 1 0
chr4:7771661|7771825 hsa-miR-584-5p 1 0 0
chr4:7771661|7771825 hsa-miR-10400-5p 1 0 0
chr4:7771661|7771825 hsa-miR-1207-5p 1 0 0
chr4:7771661|7771825 hsa-miR-4763-3p 1 0 0
chr4:7771661|7771825 hsa-miR-6769b-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6865-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6870-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6893-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6743-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6754-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6813-5p 1 0 0
chr4:7771661|7771825 hsa-miR-1249-5p 1 1 0
chr4:7771661|7771825 hsa-miR-6722-3p 1 0 0
chr4:7771661|7771825 hsa-miR-6779-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6780a-5p 1 0 0
chr4:7771661|7771825 hsa-miR-328-5p 1 0 0
chr4:7771661|7771825 hsa-miR-4726-5p 1 0 0
chr4:7771661|7771825 hsa-miR-4745-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6846-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6848-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6883-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6845-5p 1 0 0
chr4:7771661|7771825 hsa-miR-939-5p 1 0 0
chr4:7771661|7771825 hsa-miR-4758-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6511b-5p 0 1 0
chr4:7771661|7771825 hsa-miR-3940-5p 1 1 0
chr4:7771661|7771825 hsa-miR-7843-5p 1 0 0
chr4:7771661|7771825 hsa-miR-377-5p 0 1 0
chr4:7771661|7771825 hsa-miR-6736-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6855-5p 1 0 0
chr4:7771661|7771825 hsa-miR-4747-5p 1 0 0
chr4:7771661|7771825 hsa-miR-6785-5p 1 0 0
chr4:7771661|7771825 hsa-miR-3622a-3p 0 1 0
chr4:7771661|7771825 hsa-miR-3085-3p 0 1 0
chr4:7771661|7771825 hsa-miR-4756-5p 0 1 0
chr4:7771661|7771825 hsa-miR-323b-5p 0 1 0
chr4:7771661|7771825 hsa-miR-494-5p 0 1 0
chr4:7771661|7771825 hsa-miR-3922-3p 0 1 0
chr4:7771661|7771825 hsa-miR-7973 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:7771661|7771825
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MSPNHKPSHSCMVLSGVQEVALGSHRPGLEMT
Nucleotide Sequence CTGTCCCCAAACCACAAACCCAGCCACTCATGCATGGTTCTTTCAGGTGTTCAAGAGGTGGCTCTGGGGTCACACAGGCCAGGGCTTGAAATGACTTGA
CircID chr4:7771661|7771825
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MLCPQTTNPATHAWFFQVFKRWLWGHTGQGLK
Nucleotide Sequence CTGCTCTGTCCCCAAACCACAAACCCAGCCACTCATGCATGGTTCTTTCAGGTGTTCAAGAGGTGGCTCTGGGGTCACACAGGCCAGGGCTTGAAATGA
CircID chr4:7771661|7771825
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MSKQPGHCSVPKPQTQPLMHGSFRCSRGGSGVTQARA
Nucleotide Sequence CTGAGCAAGCAGCCAGGTCACTGCTCTGTCCCCAAACCACAAACCCAGCCACTCATGCATGGTTCTTTCAGGTGTTCAAGAGGTGGCTCTGGGGTCACACAGGCCAGGGCTTGA
CircID chr4:7771661|7771825
ORF Type ORF4
Protein Length 32
Nucleotide Length 96
Protein Sequence MHEWLGLWFGDRAVTWLLAQLCRREGGCPLGW
Nucleotide Sequence ATGCATGAGTGGCTGGGTTTGTGGTTTGGGGACAGAGCAGTGACCTGGCTGCTTGCTCAGCTCTGCAGGCGGGAGGGAGGTTGTCCTCTGGGTTGG
CircID chr4:7771661|7771825
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MACVTPEPPLEHLKEPCMSGWVCGLGTEQ
Nucleotide Sequence CTGGCCTGTGTGACCCCAGAGCCACCTCTTGAACACCTGAAAGAACCATGCATGAGTGGCTGGGTTTGTGGTTTGGGGACAGAGCAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab