CircRNA Information

General Information
circRNA Basic Information
CircID chr4:7774388|7774562
Strand -
CircType exon
Host Gene ENSG00000272620.1;
Algorism CIRI2;
Sequence CCGGTGACCAGAATCTACTGCGTCCTGCGGATACAGGGGCCATCCTCCAGACAATCTCTGTTGTCAGCGCCAGAAGCCGGAACAGGTCCCCCAGCACCTCCCCTGCCTCGGTGAGCAGCGTGTGGGTCTGGCCCTGGCCTCTGCCTGCACGCCGCATGTTTGACCACACAGGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:7774388|7774562 hsa-miR-492 0 0 1
chr4:7774388|7774562 hsa-miR-625-5p 0 0 1
chr4:7774388|7774562 hsa-miR-625-3p 0 0 1
chr4:7774388|7774562 hsa-miR-632 0 0 1
chr4:7774388|7774562 hsa-miR-637 1 1 1
chr4:7774388|7774562 hsa-miR-765 0 0 1
chr4:7774388|7774562 hsa-miR-936 0 0 1
chr4:7774388|7774562 hsa-miR-940 0 0 1
chr4:7774388|7774562 hsa-miR-1178-5p 0 0 1
chr4:7774388|7774562 hsa-miR-1178-3p 0 0 1
chr4:7774388|7774562 hsa-miR-1180-5p 0 0 1
chr4:7774388|7774562 hsa-miR-1180-3p 0 0 1
chr4:7774388|7774562 hsa-miR-1231 0 1 1
chr4:7774388|7774562 hsa-miR-1286 0 0 1
chr4:7774388|7774562 hsa-miR-1275 0 0 1
chr4:7774388|7774562 hsa-miR-1827 0 0 1
chr4:7774388|7774562 hsa-miR-767-3p 0 0 1
chr4:7774388|7774562 hsa-miR-1207-5p 1 1 1
chr4:7774388|7774562 hsa-miR-550 0 0 1
chr4:7774388|7774562 hsa-miR-644 0 0 1
chr4:7774388|7774562 hsa-miR-516b 0 0 1
chr4:7774388|7774562 hsa-miR-147 0 0 1
chr4:7774388|7774562 hsa-miR-549 0 0 1
chr4:7774388|7774562 hsa-miR-219-5p 0 0 1
chr4:7774388|7774562 hsa-miR-608 1 0 0
chr4:7774388|7774562 hsa-miR-663a 1 0 0
chr4:7774388|7774562 hsa-miR-2861 1 0 0
chr4:7774388|7774562 hsa-miR-4504 0 1 0
chr4:7774388|7774562 hsa-miR-4514 0 1 0
chr4:7774388|7774562 hsa-miR-4525 1 0 0
chr4:7774388|7774562 hsa-miR-4526 1 1 0
chr4:7774388|7774562 hsa-miR-3960 1 0 0
chr4:7774388|7774562 hsa-miR-4654 1 0 0
chr4:7774388|7774562 hsa-miR-4688 1 0 0
chr4:7774388|7774562 hsa-miR-4734 1 0 0
chr4:7774388|7774562 hsa-miR-5090 1 0 0
chr4:7774388|7774562 hsa-miR-6085 1 0 0
chr4:7774388|7774562 hsa-miR-6825-5p 0 1 0
chr4:7774388|7774562 hsa-miR-6894-5p 1 1 0
chr4:7774388|7774562 hsa-miR-6799-5p 1 1 0
chr4:7774388|7774562 hsa-miR-6089 1 1 0
chr4:7774388|7774562 hsa-miR-6741-5p 1 0 0
chr4:7774388|7774562 hsa-miR-6806-5p 1 1 0
chr4:7774388|7774562 hsa-miR-2467-3p 0 1 0
chr4:7774388|7774562 hsa-miR-4640-5p 1 1 0
chr4:7774388|7774562 hsa-miR-4690-5p 0 1 0
chr4:7774388|7774562 hsa-miR-149-3p 1 0 0
chr4:7774388|7774562 hsa-miR-937-5p 1 0 0
chr4:7774388|7774562 hsa-miR-6895-5p 0 1 0
chr4:7774388|7774562 hsa-miR-10400-5p 1 0 0
chr4:7774388|7774562 hsa-miR-4763-3p 1 1 0
chr4:7774388|7774562 hsa-miR-6787-5p 1 1 0
chr4:7774388|7774562 hsa-miR-6893-5p 0 1 0
chr4:7774388|7774562 hsa-miR-6775-5p 1 0 0
chr4:7774388|7774562 hsa-miR-6743-5p 1 0 0
chr4:7774388|7774562 hsa-miR-6803-5p 1 0 0
chr4:7774388|7774562 hsa-miR-6851-5p 0 1 0
chr4:7774388|7774562 hsa-miR-10401-5p 1 0 0
chr4:7774388|7774562 hsa-miR-6722-3p 1 1 0
chr4:7774388|7774562 hsa-miR-6808-5p 1 1 0
chr4:7774388|7774562 hsa-miR-6836-5p 1 0 0
chr4:7774388|7774562 hsa-miR-1909-3p 1 1 0
chr4:7774388|7774562 hsa-miR-328-5p 1 0 0
chr4:7774388|7774562 hsa-miR-6885-5p 1 0 0
chr4:7774388|7774562 hsa-miR-939-5p 1 0 0
chr4:7774388|7774562 hsa-miR-1910-3p 0 1 0
chr4:7774388|7774562 hsa-miR-6511a-5p 0 1 0
chr4:7774388|7774562 hsa-miR-6511b-5p 1 1 0
chr4:7774388|7774562 hsa-miR-550a-5p 0 1 0
chr4:7774388|7774562 hsa-miR-6837-5p 0 1 0
chr4:7774388|7774562 hsa-miR-7114-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:7774388|7774562
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MRIQGPSSRQSLLSAPEAGTGPPAPPLPR
Nucleotide Sequence CTGCGGATACAGGGGCCATCCTCCAGACAATCTCTGTTGTCAGCGCCAGAAGCCGGAACAGGTCCCCCAGCACCTCCCCTGCCTCGGTGA
CircID chr4:7774388|7774562
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence MRPADTGAILQTISVVSARSRNRSPSTSPASVSSVWVWPWPLPARRMFDHTG
Nucleotide Sequence CTGCGTCCTGCGGATACAGGGGCCATCCTCCAGACAATCTCTGTTGTCAGCGCCAGAAGCCGGAACAGGTCCCCCAGCACCTCCCCTGCCTCGGTGAGCAGCGTGTGGGTCTGGCCCTGGCCTCTGCCTGCACGCCGCATGTTTGACCACACAGGC
CircID chr4:7774388|7774562
ORF Type ORF3
Protein Length 52
Nucleotide Length 156
Protein Sequence MRRAGRGQGQTHTLLTEAGEVLGDLFRLLALTTEIVWRMAPVSAGRSRFWSP
Nucleotide Sequence ATGCGGCGTGCAGGCAGAGGCCAGGGCCAGACCCACACGCTGCTCACCGAGGCAGGGGAGGTGCTGGGGGACCTGTTCCGGCTTCTGGCGCTGACAACAGAGATTGTCTGGAGGATGGCCCCTGTATCCGCAGGACGCAGTAGATTCTGGTCACCG
CircID chr4:7774388|7774562
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MCGQTCGVQAEARARPTRCSPRQGRCWGTCSGFWR
Nucleotide Sequence CTGTGTGGTCAAACATGCGGCGTGCAGGCAGAGGCCAGGGCCAGACCCACACGCTGCTCACCGAGGCAGGGGAGGTGCTGGGGGACCTGTTCCGGCTTCTGGCGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab