CircRNA Information

General Information
circRNA Basic Information
CircID chr4:82423585|82423959
Strand -
CircType exon
Host Gene ENSG00000152795.16;
Algorism CIRI2;
Sequence CCGTTGTGTGAGATCAACTACTCTGCCTGTGAACACGTATGCCAATCCCAGTAAATAACACTGAGGCCAAGGTCCCAAAATCCAACTACACTGAATGCAAAATCCAAAGCTTTTTATTATTCCAGGTCCTCTGAAACCTGGATATAAAACGGATTCTTTTCAATGCACCCAGAGGGTCCACTGTAATGACTCAGTCACATTTGTAATGACTTAGTCACATTTGTAATGACTTTGTCATAACCAAGATACCTTTTCCACTATTCCTTTCTGAATATGTAAATATTTAACTACTTAGTTCATGCACTGTGTCAAAAACTAGATTTACTATCAAGACTTTTTCTAAACTCACAGAGCATTAACAGCTAATACAACTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:82423585|82423959 hsa-miR-27a-5p 0 0 1
chr4:82423585|82423959 hsa-miR-27a-3p 0 0 1
chr4:82423585|82423959 hsa-miR-33a-5p 0 0 1
chr4:82423585|82423959 hsa-miR-33a-3p 0 0 1
chr4:82423585|82423959 hsa-miR-148a-5p 0 0 1
chr4:82423585|82423959 hsa-miR-148a-3p 0 0 1
chr4:82423585|82423959 hsa-miR-224-5p 0 0 1
chr4:82423585|82423959 hsa-miR-224-3p 0 0 1
chr4:82423585|82423959 hsa-miR-27b-5p 0 0 1
chr4:82423585|82423959 hsa-miR-27b-3p 0 0 1
chr4:82423585|82423959 hsa-miR-152-5p 0 0 1
chr4:82423585|82423959 hsa-miR-152-3p 0 0 1
chr4:82423585|82423959 hsa-miR-134-5p 0 0 1
chr4:82423585|82423959 hsa-miR-134-3p 0 0 1
chr4:82423585|82423959 hsa-miR-186-5p 0 0 1
chr4:82423585|82423959 hsa-miR-186-3p 0 0 1
chr4:82423585|82423959 hsa-miR-155-5p 0 0 1
chr4:82423585|82423959 hsa-miR-155-3p 0 0 1
chr4:82423585|82423959 hsa-miR-377-5p 0 0 1
chr4:82423585|82423959 hsa-miR-377-3p 0 0 1
chr4:82423585|82423959 hsa-miR-382-5p 0 0 1
chr4:82423585|82423959 hsa-miR-382-3p 0 0 1
chr4:82423585|82423959 hsa-miR-326 0 0 1
chr4:82423585|82423959 hsa-miR-148b-5p 0 0 1
chr4:82423585|82423959 hsa-miR-148b-3p 0 0 1
chr4:82423585|82423959 hsa-miR-425-5p 0 0 1
chr4:82423585|82423959 hsa-miR-425-3p 0 0 1
chr4:82423585|82423959 hsa-miR-492 0 0 1
chr4:82423585|82423959 hsa-miR-507 0 0 1
chr4:82423585|82423959 hsa-miR-557 1 0 1
chr4:82423585|82423959 hsa-miR-562 0 0 1
chr4:82423585|82423959 hsa-miR-569 0 0 1
chr4:82423585|82423959 hsa-miR-619-5p 0 0 1
chr4:82423585|82423959 hsa-miR-619-3p 0 0 1
chr4:82423585|82423959 hsa-miR-631 0 0 1
chr4:82423585|82423959 hsa-miR-33b-5p 0 0 1
chr4:82423585|82423959 hsa-miR-33b-3p 0 0 1
chr4:82423585|82423959 hsa-miR-1264 0 0 1
chr4:82423585|82423959 hsa-miR-1290 0 1 1
chr4:82423585|82423959 hsa-miR-548m 0 1 1
chr4:82423585|82423959 hsa-miR-513a-5p 0 0 1
chr4:82423585|82423959 hsa-miR-582-5p 0 0 1
chr4:82423585|82423959 hsa-miR-1244 1 1 1
chr4:82423585|82423959 hsa-miR-524-5p 0 0 1
chr4:82423585|82423959 hsa-miR-330-5p 0 0 1
chr4:82423585|82423959 hsa-miR-1302 0 0 1
chr4:82423585|82423959 hsa-miR-876-5p 0 0 1
chr4:82423585|82423959 hsa-miR-342-3p 0 0 1
chr4:82423585|82423959 hsa-miR-450b-5p 0 0 1
chr4:82423585|82423959 hsa-miR-520d-5p 0 0 1
chr4:82423585|82423959 hsa-miR-128 0 0 1
chr4:82423585|82423959 hsa-miR-220c 0 0 1
chr4:82423585|82423959 hsa-miR-514 0 0 1
chr4:82423585|82423959 hsa-miR-3125 1 0 0
chr4:82423585|82423959 hsa-miR-4259 0 1 0
chr4:82423585|82423959 hsa-miR-4439 0 1 0
chr4:82423585|82423959 hsa-miR-4476 1 0 0
chr4:82423585|82423959 hsa-miR-4692 0 1 0
chr4:82423585|82423959 hsa-miR-4751 0 1 0
chr4:82423585|82423959 hsa-miR-4779 0 1 0
chr4:82423585|82423959 hsa-miR-5691 0 1 0
chr4:82423585|82423959 hsa-miR-5705 1 0 0
chr4:82423585|82423959 hsa-miR-7704 1 0 0
chr4:82423585|82423959 hsa-miR-212-5p 0 1 0
chr4:82423585|82423959 hsa-miR-124-5p 1 1 0
chr4:82423585|82423959 hsa-miR-182-5p 1 0 0
chr4:82423585|82423959 hsa-miR-6730-5p 1 0 0
chr4:82423585|82423959 hsa-miR-6741-5p 1 1 0
chr4:82423585|82423959 hsa-miR-6759-5p 0 1 0
chr4:82423585|82423959 hsa-miR-6776-5p 0 1 0
chr4:82423585|82423959 hsa-miR-6821-5p 1 0 0
chr4:82423585|82423959 hsa-miR-5004-3p 1 1 0
chr4:82423585|82423959 hsa-miR-6847-5p 1 1 0
chr4:82423585|82423959 hsa-miR-6869-5p 1 0 0
chr4:82423585|82423959 hsa-miR-4742-3p 1 0 0
chr4:82423585|82423959 hsa-miR-6813-3p 0 1 0
chr4:82423585|82423959 hsa-miR-6513-5p 0 1 0
chr4:82423585|82423959 hsa-miR-216a-3p 1 0 0
chr4:82423585|82423959 hsa-miR-548at-5p 0 1 0
chr4:82423585|82423959 hsa-miR-365a-5p 1 0 0
chr4:82423585|82423959 hsa-miR-6511a-5p 0 1 0
chr4:82423585|82423959 hsa-miR-6856-5p 1 1 0
chr4:82423585|82423959 hsa-miR-769-3p 1 0 0
chr4:82423585|82423959 hsa-miR-4757-5p 1 0 0
chr4:82423585|82423959 hsa-miR-3118 0 1 0
chr4:82423585|82423959 hsa-miR-3913-5p 0 1 0
chr4:82423585|82423959 hsa-miR-892c-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:82423585|82423959
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MRPRSQNPTTLNAKSKAFYYSRSSETWI
Nucleotide Sequence CTGAGGCCAAGGTCCCAAAATCCAACTACACTGAATGCAAAATCCAAAGCTTTTTATTATTCCAGGTCCTCTGAAACCTGGATATAA
CircID chr4:82423585|82423959
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MQNPKLFIIPGPLKPGYKTDSFQCTQRVHCNDSVTFVMT
Nucleotide Sequence ATGCAAAATCCAAAGCTTTTTATTATTCCAGGTCCTCTGAAACCTGGATATAAAACGGATTCTTTTCAATGCACCCAGAGGGTCCACTGTAATGACTCAGTCACATTTGTAATGACTTAG
CircID chr4:82423585|82423959
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MPIPVNNTEAKVPKSNYTECKIQSFLLFQVL
Nucleotide Sequence ATGCCAATCCCAGTAAATAACACTGAGGCCAAGGTCCCAAAATCCAACTACACTGAATGCAAAATCCAAAGCTTTTTATTATTCCAGGTCCTCTGA
CircID chr4:82423585|82423959
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MGPWPQCYLLGLAYVFTGRVVDLTQR
Nucleotide Sequence TTGGGACCTTGGCCTCAGTGTTATTTACTGGGATTGGCATACGTGTTCACAGGCAGAGTAGTTGATCTCACACAACGG
CircID chr4:82423585|82423959
ORF Type ORF5
Protein Length 25
Nucleotide Length 78
Protein Sequence MSHYSGPSGCIEKNPFYIQVSEDLE
Nucleotide Sequence CTGAGTCATTACAGTGGACCCTCTGGGTGCATTGAAAAGAATCCGTTTTATATCCAGGTTTCAGAGGACCTGGAATAA
CircID chr4:82423585|82423959
ORF Type ORF6
Protein Length 29
Nucleotide Length 90
Protein Sequence MDFAFSVVGFWDLGLSVIYWDWHTCSQAE
Nucleotide Sequence TTGGATTTTGCATTCAGTGTAGTTGGATTTTGGGACCTTGGCCTCAGTGTTATTTACTGGGATTGGCATACGTGTTCACAGGCAGAGTAG
CircID chr4:82423585|82423959
ORF Type ORF7
Protein Length 28
Nucleotide Length 87
Protein Sequence MGALKRIRFISRFQRTWNNKKLWILHSV
Nucleotide Sequence CTGGGTGCATTGAAAAGAATCCGTTTTATATCCAGGTTTCAGAGGACCTGGAATAATAAAAAGCTTTGGATTTTGCATTCAGTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab