CircRNA Information

General Information
circRNA Basic Information
CircID chr4:82842293|82842424
Strand +
CircType exon
Host Gene ENSG00000138674.15;
Algorism CIRI2;
Sequence CTCAGCAGCCTGTTGCTCCTCCTACTTCAAACGCTTACCCTAACACCCCTTACATATCTTCTGCTTCTTCCTATACTGGGCAGTCTCAGCTGTACGCAGCACAGCACCAGGCCTCTTCACCTACCTCCAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:82842293|82842424 hsa-let-7b-5p 0 0 1
chr4:82842293|82842424 hsa-let-7b-3p 0 0 1
chr4:82842293|82842424 hsa-let-7c-5p 0 0 1
chr4:82842293|82842424 hsa-let-7c-3p 0 0 1
chr4:82842293|82842424 hsa-let-7d-5p 0 0 1
chr4:82842293|82842424 hsa-let-7d-3p 0 0 1
chr4:82842293|82842424 hsa-let-7e-5p 0 0 1
chr4:82842293|82842424 hsa-let-7e-3p 0 0 1
chr4:82842293|82842424 hsa-miR-98-5p 0 0 1
chr4:82842293|82842424 hsa-miR-98-3p 0 0 1
chr4:82842293|82842424 hsa-let-7g-5p 0 0 1
chr4:82842293|82842424 hsa-let-7g-3p 0 0 1
chr4:82842293|82842424 hsa-let-7i-5p 0 0 1
chr4:82842293|82842424 hsa-let-7i-3p 0 0 1
chr4:82842293|82842424 hsa-miR-380-5p 0 0 1
chr4:82842293|82842424 hsa-miR-380-3p 0 0 1
chr4:82842293|82842424 hsa-miR-555 1 0 1
chr4:82842293|82842424 hsa-miR-573 0 0 1
chr4:82842293|82842424 hsa-miR-609 0 0 1
chr4:82842293|82842424 hsa-miR-765 1 0 1
chr4:82842293|82842424 hsa-miR-298 0 0 1
chr4:82842293|82842424 hsa-miR-190b-5p 0 0 1
chr4:82842293|82842424 hsa-miR-190b-3p 0 0 1
chr4:82842293|82842424 hsa-miR-1258 0 0 1
chr4:82842293|82842424 hsa-let-7a 0 0 1
chr4:82842293|82842424 hsa-let-7f 0 0 1
chr4:82842293|82842424 hsa-miR-190 0 0 1
chr4:82842293|82842424 hsa-miR-206 1 0 0
chr4:82842293|82842424 hsa-miR-608 1 0 0
chr4:82842293|82842424 hsa-miR-637 1 0 0
chr4:82842293|82842424 hsa-miR-1270 1 0 0
chr4:82842293|82842424 hsa-miR-1275 1 0 0
chr4:82842293|82842424 hsa-miR-2110 1 0 0
chr4:82842293|82842424 hsa-miR-3153 1 0 0
chr4:82842293|82842424 hsa-miR-3185 1 0 0
chr4:82842293|82842424 hsa-miR-4259 1 0 0
chr4:82842293|82842424 hsa-miR-4271 1 0 0
chr4:82842293|82842424 hsa-miR-3936 1 0 0
chr4:82842293|82842424 hsa-miR-4458 1 0 0
chr4:82842293|82842424 hsa-miR-3135b 1 0 0
chr4:82842293|82842424 hsa-miR-4478 1 0 0
chr4:82842293|82842424 hsa-miR-4534 1 0 0
chr4:82842293|82842424 hsa-miR-4651 1 0 0
chr4:82842293|82842424 hsa-miR-4688 1 0 0
chr4:82842293|82842424 hsa-miR-4739 1 0 0
chr4:82842293|82842424 hsa-miR-5194 1 0 0
chr4:82842293|82842424 hsa-miR-5572 1 0 0
chr4:82842293|82842424 hsa-miR-6085 1 0 0
chr4:82842293|82842424 hsa-miR-6086 1 0 0
chr4:82842293|82842424 hsa-miR-6133 1 0 0
chr4:82842293|82842424 hsa-miR-6165 1 0 0
chr4:82842293|82842424 hsa-miR-12118 1 0 0
chr4:82842293|82842424 hsa-miR-12119 1 0 0
chr4:82842293|82842424 hsa-miR-6734-5p 1 0 0
chr4:82842293|82842424 hsa-miR-4731-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6747-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6825-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6799-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6804-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6833-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6089 1 0 0
chr4:82842293|82842424 hsa-miR-6880-5p 1 0 0
chr4:82842293|82842424 hsa-miR-7847-3p 1 0 0
chr4:82842293|82842424 hsa-miR-4695-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6746-5p 1 0 0
chr4:82842293|82842424 hsa-miR-4709-3p 1 0 0
chr4:82842293|82842424 hsa-miR-4722-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6890-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6806-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6759-5p 1 0 0
chr4:82842293|82842424 hsa-miR-1178-5p 1 0 0
chr4:82842293|82842424 hsa-miR-1288-3p 1 0 0
chr4:82842293|82842424 hsa-miR-6742-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6748-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6772-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6796-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6732-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6805-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6798-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6760-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6881-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6782-5p 1 0 0
chr4:82842293|82842424 hsa-miR-3156-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6835-5p 1 0 0
chr4:82842293|82842424 hsa-miR-7109-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6740-5p 1 0 0
chr4:82842293|82842424 hsa-miR-1229-5p 1 0 0
chr4:82842293|82842424 hsa-miR-193b-5p 1 0 0
chr4:82842293|82842424 hsa-miR-296-3p 1 0 0
chr4:82842293|82842424 hsa-miR-4787-5p 1 0 0
chr4:82842293|82842424 hsa-miR-3162-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6802-5p 1 0 0
chr4:82842293|82842424 hsa-miR-516b-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6892-5p 1 0 0
chr4:82842293|82842424 hsa-let-7a-5p 1 0 0
chr4:82842293|82842424 hsa-miR-3179 1 0 0
chr4:82842293|82842424 hsa-miR-6841-5p 1 0 0
chr4:82842293|82842424 hsa-miR-3152-3p 1 0 0
chr4:82842293|82842424 hsa-miR-1233-5p 1 0 0
chr4:82842293|82842424 hsa-miR-1273h-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6769b-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6778-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6870-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6893-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6743-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6752-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6769a-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6803-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6813-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6842-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6851-5p 1 0 0
chr4:82842293|82842424 hsa-miR-7110-5p 1 0 0
chr4:82842293|82842424 hsa-miR-11181-3p 1 0 0
chr4:82842293|82842424 hsa-miR-1249-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6751-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6779-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6780a-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6879-5p 1 0 0
chr4:82842293|82842424 hsa-miR-7111-5p 1 0 0
chr4:82842293|82842424 hsa-miR-4728-5p 1 0 0
chr4:82842293|82842424 hsa-miR-1909-3p 1 0 0
chr4:82842293|82842424 hsa-miR-3689a-3p 1 0 0
chr4:82842293|82842424 hsa-miR-4701-3p 1 0 0
chr4:82842293|82842424 hsa-miR-6738-5p 1 0 0
chr4:82842293|82842424 hsa-miR-4436b-3p 1 0 0
chr4:82842293|82842424 hsa-miR-4723-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6831-5p 1 0 0
chr4:82842293|82842424 hsa-miR-3199 1 0 0
chr4:82842293|82842424 hsa-miR-1910-3p 1 0 0
chr4:82842293|82842424 hsa-miR-6511a-5p 1 0 0
chr4:82842293|82842424 hsa-miR-1914-3p 1 0 0
chr4:82842293|82842424 hsa-miR-6736-5p 1 0 0
chr4:82842293|82842424 hsa-miR-3173-3p 1 0 0
chr4:82842293|82842424 hsa-miR-3679-5p 1 0 0
chr4:82842293|82842424 hsa-miR-4646-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6876-5p 1 0 0
chr4:82842293|82842424 hsa-miR-6849-5p 1 0 0
chr4:82842293|82842424 hsa-miR-342-5p 1 0 0
chr4:82842293|82842424 hsa-miR-10394-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:82842293|82842424
ORF Type ORF1
Protein Length 41
Nucleotide Length 123
Protein Sequence MLLLLLQTLTLTPLTYLLLLPILGSLSCTQHSTRPLHLPPA
Nucleotide Sequence CTGTTGCTCCTCCTACTTCAAACGCTTACCCTAACACCCCTTACATATCTTCTGCTTCTTCCTATACTGGGCAGTCTCAGCTGTACGCAGCACAGCACCAGGCCTCTTCACCTACCTCCAGCC
CircID chr4:82842293|82842424
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MVLCCVQLRLPSIGRSRRYVRGVRVSV
Nucleotide Sequence CTGGTGCTGTGCTGCGTACAGCTGAGACTGCCCAGTATAGGAAGAAGCAGAAGATATGTAAGGGGTGTTAGGGTAAGCGTTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab