CircRNA Information

General Information
circRNA Basic Information
CircID chr4:865122|904779
Strand -
CircType exon
Host Gene ENSG00000178950.16;
Algorism find_circ;CIRI2;DCC;
Sequence GGGATCTGCCAGGAGAGCCCAGCAAGATGACAGCCTCGTCCAGCAACCCAGACCTGCTGGGAGGATGGGCTGCCTGGACCGAGACTGCAGCATCGGCAGTGGCCCCCACGCCAGCCACAGAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:865122|904779 hsa-miR-107 1 1 1
chr4:865122|904779 hsa-miR-198 1 1 1
chr4:865122|904779 hsa-miR-661 1 1 1
chr4:865122|904779 hsa-miR-665 1 1 1
chr4:865122|904779 hsa-miR-663b 1 1 1
chr4:865122|904779 hsa-miR-4530 1 1 1
chr4:865122|904779 hsa-miR-4656 1 1 1
chr4:865122|904779 hsa-miR-4674 1 1 1
chr4:865122|904779 hsa-miR-4686 1 1 1
chr4:865122|904779 hsa-miR-370-3p 1 1 1
chr4:865122|904779 hsa-miR-7106-5p 1 1 1
chr4:865122|904779 hsa-miR-6894-5p 1 1 1
chr4:865122|904779 hsa-miR-6720-5p 1 1 1
chr4:865122|904779 hsa-miR-1233-3p 1 1 1
chr4:865122|904779 hsa-miR-6799-5p 1 1 1
chr4:865122|904779 hsa-miR-1273d 1 1 1
chr4:865122|904779 hsa-miR-3692-5p 1 1 1
chr4:865122|904779 hsa-miR-766-5p 1 1 1
chr4:865122|904779 hsa-miR-4768-3p 1 1 1
chr4:865122|904779 hsa-miR-1225-3p 1 1 1
chr4:865122|904779 hsa-miR-3192-5p 1 1 1
chr4:865122|904779 hsa-miR-3677-5p 1 1 1
chr4:865122|904779 hsa-miR-1301-3p 1 1 1
chr4:865122|904779 hsa-miR-4459 1 1 1
chr4:865122|904779 hsa-miR-874-5p 1 1 1
chr4:865122|904779 hsa-miR-6762-3p 1 1 1
chr4:865122|904779 hsa-miR-6829-5p 1 1 1
chr4:865122|904779 hsa-miR-6888-5p 1 1 1
chr4:865122|904779 hsa-miR-30b-3p 1 1 1
chr4:865122|904779 hsa-miR-5006-5p 1 1 1
chr4:865122|904779 hsa-miR-6882-3p 1 1 1
chr4:865122|904779 hsa-miR-185-5p 1 1 1
chr4:865122|904779 hsa-miR-2277-3p 1 1 1
chr4:865122|904779 hsa-miR-548au-3p 1 1 1
chr4:865122|904779 hsa-miR-5001-3p 1 1 1
chr4:865122|904779 hsa-miR-103a-3p 1 1 1
chr4:865122|904779 hsa-miR-4638-3p 1 1 1
chr4:865122|904779 hsa-miR-3158-5p 1 1 1
chr4:865122|904779 hsa-miR-1184 1 1 1
chr4:865122|904779 hsa-miR-4776-5p 1 1 1
chr4:865122|904779 hsa-miR-328-3p 1 1 1
chr4:865122|904779 hsa-miR-4727-5p 1 1 1
chr4:865122|904779 hsa-miR-338-3p 1 1 1
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:865122|904779
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MTASSSNPDLLGGWAAWTETAASAVAPTPATE
Nucleotide Sequence ATGACAGCCTCGTCCAGCAACCCAGACCTGCTGGGAGGATGGGCTGCCTGGACCGAGACTGCAGCATCGGCAGTGGCCCCCACGCCAGCCACAGAA
CircID chr4:865122|904779
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MLQSRSRQPILPAGLGCWTRLSSCWALLADP
Nucleotide Sequence ATGCTGCAGTCTCGGTCCAGGCAGCCCATCCTCCCAGCAGGTCTGGGTTGCTGGACGAGGCTGTCATCTTGCTGGGCTCTCCTGGCAGATCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr4:865122|904779 UCHL5 0 1 0
chr4:865122|904779 U2AF2 10 0 0
chr4:865122|904779 ELAVL1 1 0 1
chr4:865122|904779 NUMA1 2 0 0
chr4:865122|904779 SF3B4 2 0 0
chr4:865122|904779 FAM120A 5 0 0
chr4:865122|904779 KHDRBS1 2 0 0
chr4:865122|904779 CELF2 1 0 0
chr4:865122|904779 FKBP4 3 0 0
chr4:865122|904779 PRPF8 0 1 1
chr4:865122|904779 YTHDF1 2 0 0
chr4:865122|904779 TAF15 7 0 0
chr4:865122|904779 FMR1 0 0 2
chr4:865122|904779 CPSF6 0 1 0
chr4:865122|904779 CSTF2 1 3 0
chr4:865122|904779 RBM15B 0 3 0
chr4:865122|904779 XRCC6 0 1 1
chr4:865122|904779 DGCR8 2 0 0
chr4:865122|904779 CPSF7 0 2 0
chr4:865122|904779 DROSHA 1 1 0
chr4:865122|904779 XPO5 3 0 0
chr4:865122|904779 NOP58 1 0 1
chr4:865122|904779 NONO 11 0 0
chr4:865122|904779 TNRC6A 1 0 0
chr4:865122|904779 KHSRP 1 0 0
chr4:865122|904779 SRSF9 1 0 0
chr4:865122|904779 HNRNPU 1 0 0
chr4:865122|904779 DDX54 2 0 2
chr4:865122|904779 LSM11 2 0 0
chr4:865122|904779 RBM10 2 5 0
chr4:865122|904779 MTPAP 0 1 0
chr4:865122|904779 HNRNPM 17 1 0
chr4:865122|904779 RBM15 0 2 0
chr4:865122|904779 FIP1L1 2 3 0
chr4:865122|904779 PTBP1 28 8 0
chr4:865122|904779 HNRNPC 49 7 0
chr4:865122|904779 YWHAG 0 1 1
chr4:865122|904779 HNRNPA2B1 3 1 0
chr4:865122|904779 LARP7 1 0 0
chr4:865122|904779 SMNDC1 1 0 0
chr4:865122|904779 MSI2 2 0 0
chr4:865122|904779 HNRNPA1 2 0 0
chr4:865122|904779 FXR1 0 1 1
chr4:865122|904779 FXR2 0 1 1
chr4:865122|904779 RBM22 0 2 0
chr4:865122|904779 SND1 1 0 1
chr4:865122|904779 IGF2BP1 4 0 0
chr4:865122|904779 IGF2BP2 7 0 1
chr4:865122|904779 HNRNPUL1 4 0 0
chr4:865122|904779 TARDBP 1 1 0
chr4:865122|904779 NCBP3 0 1 0
chr4:865122|904779 YTHDC1 0 1 0
chr4:865122|904779 BUD13 0 2 1
chr4:865122|904779 RBFOX2 10 0 0
chr4:865122|904779 YTHDF2 1 0 0
chr4:865122|904779 SLTM 2 13 2
chr4:865122|904779 DHX30 0 1 0
chr4:865122|904779 DDX42 1 0 0
chr4:865122|904779 CSTF2T 11 3 0
chr4:865122|904779 BCCIP 5 0 0
chr4:865122|904779 SAFB2 1 0 0
chr4:865122|904779 RNF219 1 0 0
chr4:865122|904779 XRN2 2 0 0
chr4:865122|904779 TIA1 1 0 0
chr4:865122|904779 TRA2A 1 0 0
chr4:865122|904779 AGO2 1 1 0
chr4:865122|904779 ATXN2 0 1 0
chr4:865122|904779 EWSR1 1 0 0
chr4:865122|904779 EIF4A3 4 3 2
chr4:865122|904779 FBL 7 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab