CircRNA Information

General Information
circRNA Basic Information
CircID chr4:87982561|87982887
Strand +
CircType exon
Host Gene ENSG00000118785.12;
Algorism CIRI2;
Sequence CTCAGAAGATGCACTATCTAATTCATGAGAAATACGAAATTTCAGGTGTTTATCTTCTTCCTTACTTTTGGGGTCTACAACCAGCATATCTTCATGGCTGTGAAATTCATGGCTGTGGAATTCACGGCTGACTTTGGAAAGTTCCTGACTATCAATCACATCGGAATGCTCATTGCTCTCATCATTGGCTTTCCGCTTATATAATCTGGACTGCTTGTGGCTGTGGGTTTCAGCACTCTGGTCATCCAGCTGACTCGTTTCATAACTGTCCTTCCCACGGCTGTCCCAATCAGAAGGCGCGTTCAGGTCCTGGGCAACGGGGATGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:87982561|87982887 hsa-miR-27a-5p 0 0 1
chr4:87982561|87982887 hsa-miR-27a-3p 0 0 1
chr4:87982561|87982887 hsa-miR-198 0 0 1
chr4:87982561|87982887 hsa-miR-27b-5p 0 0 1
chr4:87982561|87982887 hsa-miR-27b-3p 0 0 1
chr4:87982561|87982887 hsa-miR-130a-5p 0 0 1
chr4:87982561|87982887 hsa-miR-130a-3p 0 0 1
chr4:87982561|87982887 hsa-miR-301a-5p 0 0 1
chr4:87982561|87982887 hsa-miR-301a-3p 0 0 1
chr4:87982561|87982887 hsa-miR-130b-5p 0 0 1
chr4:87982561|87982887 hsa-miR-130b-3p 0 0 1
chr4:87982561|87982887 hsa-miR-410-5p 0 0 1
chr4:87982561|87982887 hsa-miR-410-3p 0 0 1
chr4:87982561|87982887 hsa-miR-492 0 0 1
chr4:87982561|87982887 hsa-miR-523-5p 0 0 1
chr4:87982561|87982887 hsa-miR-523-3p 0 0 1
chr4:87982561|87982887 hsa-miR-559 0 0 1
chr4:87982561|87982887 hsa-miR-577 0 0 1
chr4:87982561|87982887 hsa-miR-454-5p 0 0 1
chr4:87982561|87982887 hsa-miR-454-3p 0 0 1
chr4:87982561|87982887 hsa-miR-873-5p 0 0 1
chr4:87982561|87982887 hsa-miR-873-3p 0 0 1
chr4:87982561|87982887 hsa-miR-301b-5p 0 0 1
chr4:87982561|87982887 hsa-miR-301b-3p 0 0 1
chr4:87982561|87982887 hsa-miR-1179 0 0 1
chr4:87982561|87982887 hsa-miR-1237-5p 0 0 1
chr4:87982561|87982887 hsa-miR-1237-3p 0 0 1
chr4:87982561|87982887 hsa-miR-548j-5p 0 0 1
chr4:87982561|87982887 hsa-miR-548j-3p 0 0 1
chr4:87982561|87982887 hsa-miR-1287-5p 0 0 1
chr4:87982561|87982887 hsa-miR-1287-3p 0 0 1
chr4:87982561|87982887 hsa-miR-1255a 0 0 1
chr4:87982561|87982887 hsa-miR-548n 0 0 1
chr4:87982561|87982887 hsa-miR-1272 0 0 1
chr4:87982561|87982887 hsa-miR-512-3p 0 0 1
chr4:87982561|87982887 hsa-miR-509-3p 0 0 1
chr4:87982561|87982887 hsa-miR-1207-3p 0 0 1
chr4:87982561|87982887 hsa-miR-513a-5p 0 0 1
chr4:87982561|87982887 hsa-miR-1302 0 0 1
chr4:87982561|87982887 hsa-miR-455-3p 0 0 1
chr4:87982561|87982887 hsa-miR-513a-3p 0 0 1
chr4:87982561|87982887 hsa-miR-548b-5p 0 0 1
chr4:87982561|87982887 hsa-miR-548d-5p 0 0 1
chr4:87982561|87982887 hsa-miR-548c-5p 0 0 1
chr4:87982561|87982887 hsa-miR-548a-5p 0 0 1
chr4:87982561|87982887 hsa-miR-548i 0 0 1
chr4:87982561|87982887 hsa-miR-1255b 0 0 1
chr4:87982561|87982887 hsa-miR-138 0 0 1
chr4:87982561|87982887 hsa-miR-453 0 0 1
chr4:87982561|87982887 hsa-miR-548h 0 0 1
chr4:87982561|87982887 hsa-miR-5702 0 1 0
chr4:87982561|87982887 hsa-miR-8060 0 1 0
chr4:87982561|87982887 hsa-miR-8080 0 1 0
chr4:87982561|87982887 hsa-miR-12121 1 0 0
chr4:87982561|87982887 hsa-miR-6840-3p 1 1 0
chr4:87982561|87982887 hsa-miR-6825-5p 1 0 0
chr4:87982561|87982887 hsa-miR-6728-5p 1 0 0
chr4:87982561|87982887 hsa-miR-3934-3p 1 0 0
chr4:87982561|87982887 hsa-miR-1226-5p 1 0 0
chr4:87982561|87982887 hsa-miR-6749-5p 1 0 0
chr4:87982561|87982887 hsa-miR-6501-5p 1 0 0
chr4:87982561|87982887 hsa-miR-4638-3p 1 0 0
chr4:87982561|87982887 hsa-miR-149-3p 1 0 0
chr4:87982561|87982887 hsa-miR-6830-5p 1 1 0
chr4:87982561|87982887 hsa-miR-6786-3p 1 0 0
chr4:87982561|87982887 hsa-miR-4800-5p 1 0 0
chr4:87982561|87982887 hsa-miR-6729-3p 0 1 0
chr4:87982561|87982887 hsa-miR-5699-5p 0 1 0
chr4:87982561|87982887 hsa-miR-6778-5p 1 0 0
chr4:87982561|87982887 hsa-miR-6780a-5p 1 0 0
chr4:87982561|87982887 hsa-miR-1915-3p 1 0 0
chr4:87982561|87982887 hsa-miR-4728-5p 1 0 0
chr4:87982561|87982887 hsa-miR-5196-5p 1 0 0
chr4:87982561|87982887 hsa-miR-4632-5p 1 0 0
chr4:87982561|87982887 hsa-miR-4685-5p 1 0 0
chr4:87982561|87982887 hsa-miR-365b-5p 1 1 0
chr4:87982561|87982887 hsa-miR-6876-5p 0 1 0
chr4:87982561|87982887 hsa-miR-6785-5p 1 0 0
chr4:87982561|87982887 hsa-miR-4676-5p 1 0 0
chr4:87982561|87982887 hsa-miR-10523-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:87982561|87982887
ORF Type ORF1
Protein Length 59
Nucleotide Length 180
Protein Sequence MRNTKFQVFIFFLTFGVYNQHIFMAVKFMAVEFTADFGKFLTINHIGMLIALIIGFPLI
Nucleotide Sequence ATGAGAAATACGAAATTTCAGGTGTTTATCTTCTTCCTTACTTTTGGGGTCTACAACCAGCATATCTTCATGGCTGTGAAATTCATGGCTGTGGAATTCACGGCTGACTTTGGAAAGTTCCTGACTATCAATCACATCGGAATGCTCATTGCTCTCATCATTGGCTTTCCGCTTATATAA
CircID chr4:87982561|87982887
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MLVAVGFSTLVIQLTRFITVLPTAVPIRRRVQVLGNGDG
Nucleotide Sequence CTGCTTGTGGCTGTGGGTTTCAGCACTCTGGTCATCCAGCTGACTCGTTTCATAACTGTCCTTCCCACGGCTGTCCCAATCAGAAGGCGCGTTCAGGTCCTGGGCAACGGGGATGGC
CircID chr4:87982561|87982887
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MLSSLAFRLYNLDCLWLWVSALWSSS
Nucleotide Sequence TTGCTCTCATCATTGGCTTTCCGCTTATATAATCTGGACTGCTTGTGGCTGTGGGTTTCAGCACTCTGGTCATCCAGCTGA
CircID chr4:87982561|87982887
ORF Type ORF4
Protein Length 40
Nucleotide Length 123
Protein Sequence MHYLIHEKYEISGVYLLPYFWGLQPAYLHGCEIHGCGIHG
Nucleotide Sequence ATGCACTATCTAATTCATGAGAAATACGAAATTTCAGGTGTTTATCTTCTTCCTTACTTTTGGGGTCTACAACCAGCATATCTTCATGGCTGTGAAATTCATGGCTGTGGAATTCACGGCTGA
CircID chr4:87982561|87982887
ORF Type ORF5
Protein Length 102
Nucleotide Length 306
Protein Sequence MNAPSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKFRISHELDSASSE
Nucleotide Sequence CTGAACGCGCCTTCTGATTGGGACAGCCGTGGGAAGGACAGTTATGAAACGAGTCAGCTGGATGACCAGAGTGCTGAAACCCACAGCCACAAGCAGTCCAGATTATATAAGCGGAAAGCCAATGATGAGAGCAATGAGCATTCCGATGTGATTGATAGTCAGGAACTTTCCAAAGTCAGCCGTGAATTCCACAGCCATGAATTTCACAGCCATGAAGATATGCTGGTTGTAGACCCCAAAAGTAAGGAAGAAGATAAACACCTGAAATTTCGTATTTCTCATGAATTAGATAGTGCATCTTCTGAG
CircID chr4:87982561|87982887
ORF Type ORF6
Protein Length 45
Nucleotide Length 138
Protein Sequence MIGTAVGRTVMKRVSWMTRVLKPTATSSPDYISGKPMMRAMSIPM
Nucleotide Sequence CTGATTGGGACAGCCGTGGGAAGGACAGTTATGAAACGAGTCAGCTGGATGACCAGAGTGCTGAAACCCACAGCCACAAGCAGTCCAGATTATATAAGCGGAAAGCCAATGATGAGAGCAATGAGCATTCCGATGTGA
CircID chr4:87982561|87982887
ORF Type ORF7
Protein Length 26
Nucleotide Length 81
Protein Sequence MIVRNFPKSAVNSTAMNFTAMKICWL
Nucleotide Sequence TTGATAGTCAGGAACTTTCCAAAGTCAGCCGTGAATTCCACAGCCATGAATTTCACAGCCATGAAGATATGCTGGTTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab