CircRNA Information

General Information
circRNA Basic Information
CircID chr4:88267234|88267445
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGCACCCAATCAGCCAGCATCACCTGCACTCAATCATGCAGCATCACCTGCACCCAGTCATCCAGCATCACCTGCACACAATCAGCATCACCTGCATCCAATCAGCCAGCATCACCTGCACCCAAGCAATCAGCATCACCTGCACCCAGTCAGCCAGCATCACCTGCACCCAATCAGCCAGCATCACCCACACCCAATCAGCCAGCATCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:88267234|88267445 hsa-miR-609 0 0 1
chr4:88267234|88267445 hsa-miR-657 0 0 1
chr4:88267234|88267445 hsa-miR-1287-5p 0 0 1
chr4:88267234|88267445 hsa-miR-1287-3p 0 0 1
chr4:88267234|88267445 hsa-miR-1255a 0 0 1
chr4:88267234|88267445 hsa-miR-1262 0 0 1
chr4:88267234|88267445 hsa-miR-1322 1 1 1
chr4:88267234|88267445 hsa-miR-125a-3p 1 1 1
chr4:88267234|88267445 hsa-miR-509-3p 1 0 1
chr4:88267234|88267445 hsa-miR-508-3p 0 0 1
chr4:88267234|88267445 hsa-miR-1255b 0 0 1
chr4:88267234|88267445 hsa-miR-147 0 0 1
chr4:88267234|88267445 hsa-miR-219-5p 0 0 1
chr4:88267234|88267445 hsa-miR-601 1 0 0
chr4:88267234|88267445 hsa-miR-608 1 0 0
chr4:88267234|88267445 hsa-miR-648 1 0 0
chr4:88267234|88267445 hsa-miR-762 1 0 0
chr4:88267234|88267445 hsa-miR-1183 1 0 0
chr4:88267234|88267445 hsa-miR-1293 1 0 0
chr4:88267234|88267445 hsa-miR-1268a 1 0 0
chr4:88267234|88267445 hsa-miR-4316 1 0 0
chr4:88267234|88267445 hsa-miR-4322 1 0 0
chr4:88267234|88267445 hsa-miR-4259 1 0 0
chr4:88267234|88267445 hsa-miR-4265 1 0 0
chr4:88267234|88267445 hsa-miR-3665 1 1 0
chr4:88267234|88267445 hsa-miR-3911 1 0 0
chr4:88267234|88267445 hsa-miR-1268b 1 0 0
chr4:88267234|88267445 hsa-miR-4455 1 0 0
chr4:88267234|88267445 hsa-miR-3135b 1 0 0
chr4:88267234|88267445 hsa-miR-4463 1 0 0
chr4:88267234|88267445 hsa-miR-4466 1 0 0
chr4:88267234|88267445 hsa-miR-4487 1 0 0
chr4:88267234|88267445 hsa-miR-4488 1 0 0
chr4:88267234|88267445 hsa-miR-4498 1 0 0
chr4:88267234|88267445 hsa-miR-4506 1 0 0
chr4:88267234|88267445 hsa-miR-4525 1 0 0
chr4:88267234|88267445 hsa-miR-4651 1 0 0
chr4:88267234|88267445 hsa-miR-4658 1 0 0
chr4:88267234|88267445 hsa-miR-4710 1 0 0
chr4:88267234|88267445 hsa-miR-5572 1 0 0
chr4:88267234|88267445 hsa-miR-5787 1 0 0
chr4:88267234|88267445 hsa-miR-8075 1 0 0
chr4:88267234|88267445 hsa-miR-8077 1 0 0
chr4:88267234|88267445 hsa-miR-9718 1 0 0
chr4:88267234|88267445 hsa-miR-143-5p 1 0 0
chr4:88267234|88267445 hsa-miR-92a-1-5p 1 0 0
chr4:88267234|88267445 hsa-miR-504-3p 1 0 0
chr4:88267234|88267445 hsa-miR-6747-5p 1 0 0
chr4:88267234|88267445 hsa-miR-210-3p 1 0 0
chr4:88267234|88267445 hsa-miR-6861-5p 1 0 0
chr4:88267234|88267445 hsa-miR-6799-5p 1 0 0
chr4:88267234|88267445 hsa-miR-3692-5p 1 0 0
chr4:88267234|88267445 hsa-miR-8071 1 0 0
chr4:88267234|88267445 hsa-miR-3934-5p 1 0 0
chr4:88267234|88267445 hsa-miR-6744-5p 0 1 0
chr4:88267234|88267445 hsa-miR-3064-5p 1 1 0
chr4:88267234|88267445 hsa-miR-6741-5p 1 1 0
chr4:88267234|88267445 hsa-miR-6759-5p 1 0 0
chr4:88267234|88267445 hsa-miR-8069 1 0 0
chr4:88267234|88267445 hsa-miR-5589-5p 1 1 0
chr4:88267234|88267445 hsa-miR-6776-5p 1 1 0
chr4:88267234|88267445 hsa-miR-6742-5p 1 0 0
chr4:88267234|88267445 hsa-miR-6748-5p 1 0 0
chr4:88267234|88267445 hsa-miR-6772-5p 1 1 0
chr4:88267234|88267445 hsa-miR-6793-5p 1 0 0
chr4:88267234|88267445 hsa-miR-6796-5p 1 0 0
chr4:88267234|88267445 hsa-miR-185-3p 1 0 0
chr4:88267234|88267445 hsa-miR-6821-5p 1 0 0
chr4:88267234|88267445 hsa-miR-6835-5p 1 0 0
chr4:88267234|88267445 hsa-miR-1226-5p 1 0 0
chr4:88267234|88267445 hsa-miR-1909-5p 1 0 0
chr4:88267234|88267445 hsa-miR-3691-5p 1 0 0
chr4:88267234|88267445 hsa-miR-5580-5p 1 1 0
chr4:88267234|88267445 hsa-miR-1228-5p 1 0 0
chr4:88267234|88267445 hsa-miR-485-5p 1 0 0
chr4:88267234|88267445 hsa-miR-4715-5p 1 0 0
chr4:88267234|88267445 hsa-miR-574-5p 1 0 0
chr4:88267234|88267445 hsa-miR-1250-5p 1 0 0
chr4:88267234|88267445 hsa-miR-598-5p 0 1 0
chr4:88267234|88267445 hsa-miR-1306-3p 1 0 0
chr4:88267234|88267445 hsa-miR-552-3p 1 1 0
chr4:88267234|88267445 hsa-miR-6769b-5p 1 0 0
chr4:88267234|88267445 hsa-miR-6816-5p 1 0 0
chr4:88267234|88267445 hsa-miR-6893-5p 1 0 0
chr4:88267234|88267445 hsa-miR-6756-5p 1 0 0
chr4:88267234|88267445 hsa-miR-6803-5p 1 0 0
chr4:88267234|88267445 hsa-miR-10401-5p 1 0 0
chr4:88267234|88267445 hsa-miR-6751-5p 1 0 0
chr4:88267234|88267445 hsa-miR-1237-5p 1 0 0
chr4:88267234|88267445 hsa-miR-4701-3p 1 1 0
chr4:88267234|88267445 hsa-miR-4758-5p 1 1 0
chr4:88267234|88267445 hsa-miR-6511b-5p 1 0 0
chr4:88267234|88267445 hsa-miR-6736-5p 1 0 0
chr4:88267234|88267445 hsa-miR-6790-5p 1 0 0
chr4:88267234|88267445 hsa-miR-3529-5p 1 0 0
chr4:88267234|88267445 hsa-miR-9851-5p 1 0 0
chr4:88267234|88267445 hsa-miR-6884-5p 1 0 0
chr4:88267234|88267445 hsa-miR-10394-5p 1 1 0
chr4:88267234|88267445 hsa-miR-664a-5p 1 0 0
chr4:88267234|88267445 hsa-miR-6504-5p 1 1 0
chr4:88267234|88267445 hsa-miR-130b-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:88267234|88267445
ORF Type ORF1
Protein Length 70
Nucleotide Length 210
Protein Sequence LHPISQHHLHSIMQHHLHPVIQHHLHTISITCIQSASITCTQAISITCTQSASITCTQSASITHTQSASI
Nucleotide Sequence CTGCACCCAATCAGCCAGCATCACCTGCACTCAATCATGCAGCATCACCTGCACCCAGTCATCCAGCATCACCTGCACACAATCAGCATCACCTGCATCCAATCAGCCAGCATCACCTGCACCCAAGCAATCAGCATCACCTGCACCCAGTCAGCCAGCATCACCTGCACCCAATCAGCCAGCATCACCCACACCCAATCAGCCAGCATC
CircID chr4:88267234|88267445
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MHPISQHHLHPSNQHHLHPVSQHHLHPISQHHPHPISQHH
Nucleotide Sequence CTGCATCCAATCAGCCAGCATCACCTGCACCCAAGCAATCAGCATCACCTGCACCCAGTCAGCCAGCATCACCTGCACCCAATCAGCCAGCATCACCCACACCCAATCAGCCAGCATCAT
CircID chr4:88267234|88267445
ORF Type ORF3
Protein Length 47
Nucleotide Length 144
Protein Sequence MMLADWVWVMLADWVQVMLADWVQVMLIAWVQVMLADWMQVMLIVCR
Nucleotide Sequence ATGATGCTGGCTGATTGGGTGTGGGTGATGCTGGCTGATTGGGTGCAGGTGATGCTGGCTGACTGGGTGCAGGTGATGCTGATTGCTTGGGTGCAGGTGATGCTGGCTGATTGGATGCAGGTGATGCTGATTGTGTGCAGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab