CircRNA Information

General Information
circRNA Basic Information
CircID chr4:88267306|88267445
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGCACCCAATCAGCCAGCATCACCTGCACTCAATCATGCAGCATCACCTGCACCCAGTCATCCAGCATCACCTGCACACAATCAGCATCACCTGCATCCAATCAGCCAGCATCACCTGCACCCAAGCAATCAGCATCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:88267306|88267445 hsa-miR-657 0 0 1
chr4:88267306|88267445 hsa-miR-1287-5p 0 0 1
chr4:88267306|88267445 hsa-miR-1287-3p 0 0 1
chr4:88267306|88267445 hsa-miR-1255a 0 0 1
chr4:88267306|88267445 hsa-miR-1262 0 0 1
chr4:88267306|88267445 hsa-miR-125a-3p 1 1 1
chr4:88267306|88267445 hsa-miR-509-3p 0 0 1
chr4:88267306|88267445 hsa-miR-508-3p 0 0 1
chr4:88267306|88267445 hsa-miR-1255b 0 0 1
chr4:88267306|88267445 hsa-miR-147 0 0 1
chr4:88267306|88267445 hsa-miR-219-5p 0 0 1
chr4:88267306|88267445 hsa-miR-601 1 0 0
chr4:88267306|88267445 hsa-miR-648 1 0 0
chr4:88267306|88267445 hsa-miR-1183 1 0 0
chr4:88267306|88267445 hsa-miR-1322 1 1 0
chr4:88267306|88267445 hsa-miR-3665 1 1 0
chr4:88267306|88267445 hsa-miR-3135b 1 0 0
chr4:88267306|88267445 hsa-miR-4463 1 0 0
chr4:88267306|88267445 hsa-miR-4466 1 0 0
chr4:88267306|88267445 hsa-miR-4487 1 0 0
chr4:88267306|88267445 hsa-miR-4498 1 0 0
chr4:88267306|88267445 hsa-miR-4525 1 0 0
chr4:88267306|88267445 hsa-miR-4658 1 0 0
chr4:88267306|88267445 hsa-miR-5572 1 0 0
chr4:88267306|88267445 hsa-miR-5787 1 0 0
chr4:88267306|88267445 hsa-miR-8075 1 0 0
chr4:88267306|88267445 hsa-miR-9718 1 0 0
chr4:88267306|88267445 hsa-miR-143-5p 1 0 0
chr4:88267306|88267445 hsa-miR-504-3p 1 0 0
chr4:88267306|88267445 hsa-miR-210-3p 1 0 0
chr4:88267306|88267445 hsa-miR-6861-5p 1 0 0
chr4:88267306|88267445 hsa-miR-3934-5p 1 0 0
chr4:88267306|88267445 hsa-miR-6744-5p 0 1 0
chr4:88267306|88267445 hsa-miR-3064-5p 1 1 0
chr4:88267306|88267445 hsa-miR-6741-5p 1 1 0
chr4:88267306|88267445 hsa-miR-8069 1 0 0
chr4:88267306|88267445 hsa-miR-5589-5p 1 0 0
chr4:88267306|88267445 hsa-miR-6776-5p 1 1 0
chr4:88267306|88267445 hsa-miR-6772-5p 1 1 0
chr4:88267306|88267445 hsa-miR-6835-5p 1 0 0
chr4:88267306|88267445 hsa-miR-1226-5p 1 0 0
chr4:88267306|88267445 hsa-miR-1909-5p 1 0 0
chr4:88267306|88267445 hsa-miR-1228-5p 1 0 0
chr4:88267306|88267445 hsa-miR-485-5p 1 0 0
chr4:88267306|88267445 hsa-miR-4715-5p 1 0 0
chr4:88267306|88267445 hsa-miR-574-5p 1 0 0
chr4:88267306|88267445 hsa-miR-3189-3p 1 0 0
chr4:88267306|88267445 hsa-miR-1250-5p 1 0 0
chr4:88267306|88267445 hsa-miR-598-5p 0 1 0
chr4:88267306|88267445 hsa-miR-1306-3p 1 0 0
chr4:88267306|88267445 hsa-miR-552-3p 1 0 0
chr4:88267306|88267445 hsa-miR-6769b-5p 1 0 0
chr4:88267306|88267445 hsa-miR-6816-5p 1 0 0
chr4:88267306|88267445 hsa-miR-6893-5p 1 0 0
chr4:88267306|88267445 hsa-miR-6756-5p 1 0 0
chr4:88267306|88267445 hsa-miR-6803-5p 1 0 0
chr4:88267306|88267445 hsa-miR-6751-5p 1 0 0
chr4:88267306|88267445 hsa-miR-1237-5p 1 0 0
chr4:88267306|88267445 hsa-miR-4701-3p 1 1 0
chr4:88267306|88267445 hsa-miR-4758-5p 1 1 0
chr4:88267306|88267445 hsa-miR-6511b-5p 1 0 0
chr4:88267306|88267445 hsa-miR-6790-5p 1 0 0
chr4:88267306|88267445 hsa-miR-9851-5p 1 0 0
chr4:88267306|88267445 hsa-miR-6884-5p 1 0 0
chr4:88267306|88267445 hsa-miR-10394-5p 1 0 0
chr4:88267306|88267445 hsa-miR-6504-5p 1 1 0
chr4:88267306|88267445 hsa-miR-130b-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr4:88267306|88267445
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence LHPISQHHLHSIMQHHLHPVIQHHLHTISITCIQSASITCTQAISI
Nucleotide Sequence CTGCACCCAATCAGCCAGCATCACCTGCACTCAATCATGCAGCATCACCTGCACCCAGTCATCCAGCATCACCTGCACACAATCAGCATCACCTGCATCCAATCAGCCAGCATCACCTGCACCCAAGCAATCAGCATC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab