CircRNA Information

General Information
circRNA Basic Information
CircID chr4:90410737|90410996
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence ATTCAACAGCTAGGAGAAGGCAAGAAATAACTAAGATCAGAGAAGAGCTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTCGAAAGGATCAACAAAATTGATAGACCACTAGCAAGACTAATAAAGAAGCAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGACAAAGAGGATATCACCACTGATCCCACAGAAATACAAACCAGCATCAGAGAATACTATAAACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:90410737|90410996 hsa-miR-205-5p 0 0 1
chr4:90410737|90410996 hsa-miR-205-3p 0 0 1
chr4:90410737|90410996 hsa-miR-431-5p 0 0 1
chr4:90410737|90410996 hsa-miR-431-3p 0 0 1
chr4:90410737|90410996 hsa-miR-578 0 0 1
chr4:90410737|90410996 hsa-miR-592 0 0 1
chr4:90410737|90410996 hsa-miR-593-5p 0 0 1
chr4:90410737|90410996 hsa-miR-593-3p 0 0 1
chr4:90410737|90410996 hsa-miR-599 0 0 1
chr4:90410737|90410996 hsa-miR-601 0 0 1
chr4:90410737|90410996 hsa-miR-616-5p 0 0 1
chr4:90410737|90410996 hsa-miR-616-3p 0 0 1
chr4:90410737|90410996 hsa-miR-630 0 0 1
chr4:90410737|90410996 hsa-miR-638 1 0 1
chr4:90410737|90410996 hsa-miR-640 0 0 1
chr4:90410737|90410996 hsa-miR-653-5p 0 0 1
chr4:90410737|90410996 hsa-miR-653-3p 0 0 1
chr4:90410737|90410996 hsa-miR-942-5p 0 0 1
chr4:90410737|90410996 hsa-miR-942-3p 0 0 1
chr4:90410737|90410996 hsa-miR-1267 0 0 1
chr4:90410737|90410996 hsa-miR-140-5p 0 0 1
chr4:90410737|90410996 hsa-miR-129-5p 0 0 1
chr4:90410737|90410996 hsa-miR-501-5p 0 0 1
chr4:90410737|90410996 hsa-miR-769-3p 0 0 1
chr4:90410737|90410996 hsa-miR-450b-3p 0 0 1
chr4:90410737|90410996 hsa-miR-548d-3p 0 0 1
chr4:90410737|90410996 hsa-miR-138 0 0 1
chr4:90410737|90410996 hsa-miR-664 0 0 1
chr4:90410737|90410996 hsa-miR-4322 1 0 0
chr4:90410737|90410996 hsa-miR-4654 1 1 0
chr4:90410737|90410996 hsa-miR-5087 1 1 0
chr4:90410737|90410996 hsa-miR-7114-5p 1 0 0
chr4:90410737|90410996 hsa-miR-6873-3p 1 0 0
chr4:90410737|90410996 hsa-miR-1915-5p 1 0 0
chr4:90410737|90410996 hsa-miR-5010-3p 0 1 0
chr4:90410737|90410996 hsa-miR-6818-3p 0 1 0
chr4:90410737|90410996 hsa-miR-1236-3p 1 0 0
chr4:90410737|90410996 hsa-miR-1250-5p 1 0 0
chr4:90410737|90410996 hsa-miR-3192-3p 1 0 0
chr4:90410737|90410996 hsa-miR-329-5p 0 1 0
chr4:90410737|90410996 hsa-miR-320a-5p 0 1 0
chr4:90410737|90410996 hsa-miR-7107-3p 1 1 0
chr4:90410737|90410996 hsa-miR-103a-1-5p 0 1 0
chr4:90410737|90410996 hsa-miR-6833-3p 0 1 0
chr4:90410737|90410996 hsa-miR-6824-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr4:90410737|90410996
ORF Type ORF1
Protein Length 71
Nucleotide Length 213
Protein Sequence MKEIETQKTLQKINESRSWFFERINKIDRPLARLIKKQREKNQIDTIKNDKEDITTDPTEIQTSIREYYKH
Nucleotide Sequence CTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTCGAAAGGATCAACAAAATTGATAGACCACTAGCAAGACTAATAAAGAAGCAAAGAGAGAAGAATCAAATAGACACAATAAAAAATGACAAAGAGGATATCACCACTGATCCCACAGAAATACAAACCAGCATCAGAGAATACTATAAACAC

CircID chr4:90410737|90410996
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MYFCGISGDILFVIFYCVYLILLSLLLY
Nucleotide Sequence TTGTATTTCTGTGGGATCAGTGGTGATATCCTCTTTGTCATTTTTTATTGTGTCTATTTGATTCTTCTCTCTTTGCTTCTTTATTAG

CircID chr4:90410737|90410996
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MKGFLCLYFLQLFSDLSYFLPSPSC
Nucleotide Sequence TTGAAGGGTTTTTTGTGTCTCTATTTCCTTCAGCTCTTCTCTGATCTTAGTTATTTCTTGCCTTCTCCTAGCTGTTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites