CircRNA Information

General Information
circRNA Basic Information
CircID chr4:98392507|98392751
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGAGAAAAATGCAATTTATATGAAATGTAATAAATTTCTTTTTTTTTCTTGAGACAGGGTCTGGCTCTGCCACCCAGGCTGGAGTGCAGTGGCATGATGTCGGATCACTGCAACCTCTGCCTCCTGGGCTCAAGTGATCCTCCTGCCTCGGTCTCCTGAGTAGCTAGGACTACTGGCACTAGCCACCACACCCAGCTAATTTTTGTATTTTTTGTAAAGATGGGCCCAGACTGGTCTCGAATTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr4:98392507|98392751 hsa-miR-33a-5p 0 0 1
chr4:98392507|98392751 hsa-miR-33a-3p 0 0 1
chr4:98392507|98392751 hsa-miR-10a-5p 0 0 1
chr4:98392507|98392751 hsa-miR-10a-3p 0 0 1
chr4:98392507|98392751 hsa-miR-10b-5p 0 0 1
chr4:98392507|98392751 hsa-miR-10b-3p 0 0 1
chr4:98392507|98392751 hsa-miR-519e-5p 0 0 1
chr4:98392507|98392751 hsa-miR-519e-3p 0 0 1
chr4:98392507|98392751 hsa-miR-504-5p 0 0 1
chr4:98392507|98392751 hsa-miR-504-3p 0 0 1
chr4:98392507|98392751 hsa-miR-510-5p 0 0 1
chr4:98392507|98392751 hsa-miR-510-3p 0 0 1
chr4:98392507|98392751 hsa-miR-609 0 0 1
chr4:98392507|98392751 hsa-miR-612 0 0 1
chr4:98392507|98392751 hsa-miR-622 0 0 1
chr4:98392507|98392751 hsa-miR-33b-5p 0 0 1
chr4:98392507|98392751 hsa-miR-33b-3p 0 0 1
chr4:98392507|98392751 hsa-miR-650 0 1 1
chr4:98392507|98392751 hsa-miR-661 0 1 1
chr4:98392507|98392751 hsa-miR-766-5p 0 0 1
chr4:98392507|98392751 hsa-miR-766-3p 0 0 1
chr4:98392507|98392751 hsa-miR-665 1 1 1
chr4:98392507|98392751 hsa-miR-940 0 0 1
chr4:98392507|98392751 hsa-miR-1293 0 0 1
chr4:98392507|98392751 hsa-miR-513c-5p 0 0 1
chr4:98392507|98392751 hsa-miR-513c-3p 0 0 1
chr4:98392507|98392751 hsa-miR-1827 0 0 1
chr4:98392507|98392751 hsa-miR-512-5p 0 0 1
chr4:98392507|98392751 hsa-miR-1225-3p 0 0 1
chr4:98392507|98392751 hsa-miR-296-5p 0 0 1
chr4:98392507|98392751 hsa-miR-339-5p 0 1 1
chr4:98392507|98392751 hsa-miR-508-5p 0 0 1
chr4:98392507|98392751 hsa-miR-524-5p 0 0 1
chr4:98392507|98392751 hsa-miR-199b-3p 0 0 1
chr4:98392507|98392751 hsa-miR-199a-3p 0 0 1
chr4:98392507|98392751 hsa-miR-515-3p 0 0 1
chr4:98392507|98392751 hsa-miR-520d-5p 0 0 1
chr4:98392507|98392751 hsa-miR-556-3p 0 0 1
chr4:98392507|98392751 hsa-miR-1233 0 0 1
chr4:98392507|98392751 hsa-miR-1285 0 0 1
chr4:98392507|98392751 hsa-miR-371-3p 0 0 1
chr4:98392507|98392751 hsa-miR-1245 0 0 1
chr4:98392507|98392751 hsa-miR-762 1 0 0
chr4:98392507|98392751 hsa-miR-1291 0 1 0
chr4:98392507|98392751 hsa-miR-1268a 1 0 0
chr4:98392507|98392751 hsa-miR-4259 1 0 0
chr4:98392507|98392751 hsa-miR-3937 1 0 0
chr4:98392507|98392751 hsa-miR-1268b 1 0 0
chr4:98392507|98392751 hsa-miR-4421 0 1 0
chr4:98392507|98392751 hsa-miR-4454 0 1 0
chr4:98392507|98392751 hsa-miR-1587 1 0 0
chr4:98392507|98392751 hsa-miR-4540 0 1 0
chr4:98392507|98392751 hsa-miR-4689 1 0 0
chr4:98392507|98392751 hsa-miR-4739 1 0 0
chr4:98392507|98392751 hsa-miR-4794 0 1 0
chr4:98392507|98392751 hsa-miR-6075 1 0 0
chr4:98392507|98392751 hsa-miR-6860 1 0 0
chr4:98392507|98392751 hsa-miR-7703 0 1 0
chr4:98392507|98392751 hsa-miR-8055 0 1 0
chr4:98392507|98392751 hsa-miR-8089 1 0 0
chr4:98392507|98392751 hsa-miR-12127 0 1 0
chr4:98392507|98392751 hsa-miR-4433a-3p 1 0 0
chr4:98392507|98392751 hsa-miR-6861-5p 1 0 0
chr4:98392507|98392751 hsa-miR-6720-5p 0 1 0
chr4:98392507|98392751 hsa-miR-1227-5p 1 0 0
chr4:98392507|98392751 hsa-miR-4786-5p 1 1 0
chr4:98392507|98392751 hsa-miR-4768-3p 0 1 0
chr4:98392507|98392751 hsa-miR-6089 1 1 0
chr4:98392507|98392751 hsa-miR-6807-5p 1 0 0
chr4:98392507|98392751 hsa-miR-4695-5p 0 1 0
chr4:98392507|98392751 hsa-miR-769-5p 1 0 0
chr4:98392507|98392751 hsa-miR-6746-5p 1 0 0
chr4:98392507|98392751 hsa-miR-4722-5p 0 1 0
chr4:98392507|98392751 hsa-miR-4755-3p 0 1 0
chr4:98392507|98392751 hsa-miR-6741-5p 1 0 0
chr4:98392507|98392751 hsa-miR-6776-5p 0 1 0
chr4:98392507|98392751 hsa-miR-6849-3p 0 1 0
chr4:98392507|98392751 hsa-miR-6772-5p 1 0 0
chr4:98392507|98392751 hsa-miR-4793-3p 0 1 0
chr4:98392507|98392751 hsa-let-7d-5p 0 1 0
chr4:98392507|98392751 hsa-let-7b-5p 0 1 0
chr4:98392507|98392751 hsa-miR-6749-5p 1 0 0
chr4:98392507|98392751 hsa-miR-4800-5p 1 0 0
chr4:98392507|98392751 hsa-miR-1289 1 0 0
chr4:98392507|98392751 hsa-let-7c-5p 0 1 0
chr4:98392507|98392751 hsa-let-7e-5p 0 1 0
chr4:98392507|98392751 hsa-let-7a-5p 0 1 0
chr4:98392507|98392751 hsa-miR-3664-3p 0 1 0
chr4:98392507|98392751 hsa-miR-98-5p 0 1 0
chr4:98392507|98392751 hsa-miR-4763-3p 0 1 0
chr4:98392507|98392751 hsa-miR-6769b-5p 1 0 0
chr4:98392507|98392751 hsa-miR-6893-5p 0 1 0
chr4:98392507|98392751 hsa-miR-6775-5p 1 0 0
chr4:98392507|98392751 hsa-miR-6803-5p 1 0 0
chr4:98392507|98392751 hsa-miR-6722-3p 0 1 0
chr4:98392507|98392751 hsa-miR-6751-5p 1 0 0
chr4:98392507|98392751 hsa-miR-3620-5p 1 0 0
chr4:98392507|98392751 hsa-miR-6511a-5p 0 1 0
chr4:98392507|98392751 hsa-miR-1199-5p 1 0 0
chr4:98392507|98392751 hsa-miR-6773-5p 1 1 0
chr4:98392507|98392751 hsa-miR-6724-5p 1 1 0
chr4:98392507|98392751 hsa-miR-6807-3p 0 1 0
chr4:98392507|98392751 hsa-miR-367-3p 0 1 0
chr4:98392507|98392751 hsa-miR-203b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr4:98392507|98392751
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MRQGLALPPRLECSGMMSDHCNLCLLGSSDPPASVS
Nucleotide Sequence TTGAGACAGGGTCTGGCTCTGCCACCCAGGCTGGAGTGCAGTGGCATGATGTCGGATCACTGCAACCTCTGCCTCCTGGGCTCAAGTGATCCTCCTGCCTCGGTCTCCTGA
CircID chr4:98392507|98392751
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MSPGGRGCSDPTSCHCTPAWVAEPDPVSRKKKKFITFHINCIFL
Nucleotide Sequence TTGAGCCCAGGAGGCAGAGGTTGCAGTGATCCGACATCATGCCACTGCACTCCAGCCTGGGTGGCAGAGCCAGACCCTGTCTCAAGAAAAAAAAAGAAATTTATTACATTTCATATAAATTGCATTTTTCTC
CircID chr4:98392507|98392751
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MPLHSSLGGRARPCLKKKKEIYYISYKLHFSQ
Nucleotide Sequence ATGCCACTGCACTCCAGCCTGGGTGGCAGAGCCAGACCCTGTCTCAAGAAAAAAAAAGAAATTTATTACATTTCATATAAATTGCATTTTTCTCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab