CircRNA Information

General Information
circRNA Basic Information
CircID chr5:10279636|10279901
Strand +
CircType exon
Host Gene ENSG00000164237.7;
Algorism CIRI2;
Sequence CTGGAGAATTTGAATGATAGAGAATGATAGAGTAATACCCTAATTATTAGTTAAAACCTACAGGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATATAAAAATCAGCCGGGCATGGTGGCATGTGCCTGTAATCCCAGCTACTCAGGAGTCTGAGGAGGAGAATCACTTGAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:10279636|10279901 hsa-miR-17-5p 0 0 1
chr5:10279636|10279901 hsa-miR-17-3p 0 0 1
chr5:10279636|10279901 hsa-miR-20a-5p 0 0 1
chr5:10279636|10279901 hsa-miR-20a-3p 0 0 1
chr5:10279636|10279901 hsa-miR-26b-5p 0 0 1
chr5:10279636|10279901 hsa-miR-26b-3p 0 0 1
chr5:10279636|10279901 hsa-miR-93-5p 0 0 1
chr5:10279636|10279901 hsa-miR-93-3p 0 0 1
chr5:10279636|10279901 hsa-miR-106a-5p 0 0 1
chr5:10279636|10279901 hsa-miR-106a-3p 0 0 1
chr5:10279636|10279901 hsa-miR-197-5p 0 0 1
chr5:10279636|10279901 hsa-miR-197-3p 0 0 1
chr5:10279636|10279901 hsa-miR-150-5p 0 0 1
chr5:10279636|10279901 hsa-miR-150-3p 0 0 1
chr5:10279636|10279901 hsa-miR-106b-5p 0 0 1
chr5:10279636|10279901 hsa-miR-106b-3p 0 0 1
chr5:10279636|10279901 hsa-miR-302a-5p 0 0 1
chr5:10279636|10279901 hsa-miR-302a-3p 0 0 1
chr5:10279636|10279901 hsa-miR-302b-5p 0 0 1
chr5:10279636|10279901 hsa-miR-302b-3p 0 0 1
chr5:10279636|10279901 hsa-miR-302c-5p 0 0 1
chr5:10279636|10279901 hsa-miR-302c-3p 0 0 1
chr5:10279636|10279901 hsa-miR-302d-5p 0 0 1
chr5:10279636|10279901 hsa-miR-302d-3p 0 0 1
chr5:10279636|10279901 hsa-miR-372-5p 0 0 1
chr5:10279636|10279901 hsa-miR-372-3p 0 0 1
chr5:10279636|10279901 hsa-miR-373-5p 0 0 1
chr5:10279636|10279901 hsa-miR-373-3p 0 0 1
chr5:10279636|10279901 hsa-miR-20b-5p 0 0 1
chr5:10279636|10279901 hsa-miR-20b-3p 0 0 1
chr5:10279636|10279901 hsa-miR-520e-5p 0 0 1
chr5:10279636|10279901 hsa-miR-520e-3p 0 0 1
chr5:10279636|10279901 hsa-miR-520b-5p 0 0 1
chr5:10279636|10279901 hsa-miR-520b-3p 0 0 1
chr5:10279636|10279901 hsa-miR-519d-5p 0 0 1
chr5:10279636|10279901 hsa-miR-519d-3p 0 0 1
chr5:10279636|10279901 hsa-miR-520g-5p 0 0 1
chr5:10279636|10279901 hsa-miR-520g-3p 0 0 1
chr5:10279636|10279901 hsa-miR-520h 0 0 1
chr5:10279636|10279901 hsa-miR-588 0 0 1
chr5:10279636|10279901 hsa-miR-607 0 0 1
chr5:10279636|10279901 hsa-miR-640 0 1 1
chr5:10279636|10279901 hsa-miR-411-5p 0 0 1
chr5:10279636|10279901 hsa-miR-411-3p 0 0 1
chr5:10279636|10279901 hsa-miR-766-5p 0 0 1
chr5:10279636|10279901 hsa-miR-766-3p 0 0 1
chr5:10279636|10279901 hsa-miR-1234-3p 0 0 1
chr5:10279636|10279901 hsa-miR-1200 0 0 1
chr5:10279636|10279901 hsa-miR-1297 0 0 1
chr5:10279636|10279901 hsa-miR-302e 0 0 1
chr5:10279636|10279901 hsa-miR-1234 0 0 1
chr5:10279636|10279901 hsa-miR-512-3p 0 0 1
chr5:10279636|10279901 hsa-miR-941 0 0 1
chr5:10279636|10279901 hsa-miR-1224-3p 0 1 1
chr5:10279636|10279901 hsa-miR-520d-3p 0 0 1
chr5:10279636|10279901 hsa-miR-520a-3p 0 0 1
chr5:10279636|10279901 hsa-miR-520c-3p 0 0 1
chr5:10279636|10279901 hsa-miR-515-5p 0 0 1
chr5:10279636|10279901 hsa-miR-26a 0 0 1
chr5:10279636|10279901 hsa-miR-1245 0 0 1
chr5:10279636|10279901 hsa-miR-609 1 0 0
chr5:10279636|10279901 hsa-miR-638 1 0 0
chr5:10279636|10279901 hsa-miR-1303 0 1 0
chr5:10279636|10279901 hsa-miR-1245a 0 1 0
chr5:10279636|10279901 hsa-miR-3159 0 1 0
chr5:10279636|10279901 hsa-miR-4269 0 1 0
chr5:10279636|10279901 hsa-miR-4425 0 1 0
chr5:10279636|10279901 hsa-miR-4452 1 1 0
chr5:10279636|10279901 hsa-miR-4538 1 0 0
chr5:10279636|10279901 hsa-miR-4682 1 0 0
chr5:10279636|10279901 hsa-miR-4665-3p 1 0 0
chr5:10279636|10279901 hsa-miR-6861-5p 1 1 0
chr5:10279636|10279901 hsa-miR-29b-2-5p 0 1 0
chr5:10279636|10279901 hsa-miR-767-5p 0 1 0
chr5:10279636|10279901 hsa-miR-5585-3p 1 1 0
chr5:10279636|10279901 hsa-miR-4787-5p 1 0 0
chr5:10279636|10279901 hsa-miR-378a-5p 0 1 0
chr5:10279636|10279901 hsa-miR-6504-3p 0 1 0
chr5:10279636|10279901 hsa-miR-6513-5p 0 1 0
chr5:10279636|10279901 hsa-miR-5589-3p 0 1 0
chr5:10279636|10279901 hsa-miR-6726-5p 1 0 0
chr5:10279636|10279901 hsa-miR-6813-5p 1 0 0
chr5:10279636|10279901 hsa-miR-6855-5p 0 1 0
chr5:10279636|10279901 hsa-miR-619-5p 1 1 0
chr5:10279636|10279901 hsa-miR-6811-5p 0 1 0
chr5:10279636|10279901 hsa-miR-6506-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:10279636|10279901
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MSSWDYRHMPPCPADFYIFSRDGVSPCWPGWS
Nucleotide Sequence CTGAGTAGCTGGGATTACAGGCACATGCCACCATGCCCGGCTGATTTTTATATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGA
CircID chr5:10279636|10279901
ORF Type ORF2
Protein Length 50
Nucleotide Length 153
Protein Sequence MIFIFLVEMGFHHVGQAGLELLTSSDPPTSASQSAGITGVSHRTRPVGFN
Nucleotide Sequence CTGATTTTTATATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCTGTAGGTTTTAACTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab