CircRNA Information

General Information
circRNA Basic Information
CircID chr5:10391552|10391694
Strand +
CircType exon
Host Gene ENSG00000145495.13;
Algorism CIRI2;
Sequence ACCAGCGTCATCTTCCTCCTCATTGTCCTCCTCCTCCTCTTCTGCCTGGTCATCCTGGGCATCAGGGTTTTCCCCCACCACTGCGTTCTCAGCTGGTGGGTTAGCAGGCTGATCAGCAGCAACATTTTCTGCACCATTTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:10391552|10391694 hsa-miR-146a-5p 0 0 1
chr5:10391552|10391694 hsa-miR-146a-3p 0 0 1
chr5:10391552|10391694 hsa-miR-383-5p 0 0 1
chr5:10391552|10391694 hsa-miR-383-3p 0 0 1
chr5:10391552|10391694 hsa-miR-522-5p 0 0 1
chr5:10391552|10391694 hsa-miR-522-3p 0 0 1
chr5:10391552|10391694 hsa-miR-589-5p 0 0 1
chr5:10391552|10391694 hsa-miR-589-3p 0 0 1
chr5:10391552|10391694 hsa-miR-596 0 0 1
chr5:10391552|10391694 hsa-miR-625-5p 0 0 1
chr5:10391552|10391694 hsa-miR-625-3p 0 0 1
chr5:10391552|10391694 hsa-miR-765 1 1 1
chr5:10391552|10391694 hsa-miR-298 1 1 1
chr5:10391552|10391694 hsa-miR-541-5p 0 0 1
chr5:10391552|10391694 hsa-miR-541-3p 0 0 1
chr5:10391552|10391694 hsa-miR-1226-5p 0 0 1
chr5:10391552|10391694 hsa-miR-1226-3p 0 0 1
chr5:10391552|10391694 hsa-miR-1275 1 1 1
chr5:10391552|10391694 hsa-miR-654-5p 0 0 1
chr5:10391552|10391694 hsa-miR-409-3p 0 0 1
chr5:10391552|10391694 hsa-miR-146b-5p 0 0 1
chr5:10391552|10391694 hsa-miR-638 1 0 0
chr5:10391552|10391694 hsa-miR-3154 1 1 0
chr5:10391552|10391694 hsa-miR-4271 1 0 0
chr5:10391552|10391694 hsa-miR-3937 1 0 0
chr5:10391552|10391694 hsa-miR-2392 1 0 0
chr5:10391552|10391694 hsa-miR-4514 1 1 0
chr5:10391552|10391694 hsa-miR-4525 1 0 0
chr5:10391552|10391694 hsa-miR-4533 1 0 0
chr5:10391552|10391694 hsa-miR-4647 1 0 0
chr5:10391552|10391694 hsa-miR-4673 1 1 0
chr5:10391552|10391694 hsa-miR-4688 1 0 0
chr5:10391552|10391694 hsa-miR-4689 0 1 0
chr5:10391552|10391694 hsa-miR-4739 1 0 0
chr5:10391552|10391694 hsa-miR-4784 1 0 0
chr5:10391552|10391694 hsa-miR-5698 1 1 0
chr5:10391552|10391694 hsa-miR-6124 1 0 0
chr5:10391552|10391694 hsa-miR-6133 1 0 0
chr5:10391552|10391694 hsa-miR-6165 1 0 0
chr5:10391552|10391694 hsa-miR-12114 1 0 0
chr5:10391552|10391694 hsa-miR-12118 1 0 0
chr5:10391552|10391694 hsa-miR-12124 0 1 0
chr5:10391552|10391694 hsa-miR-4433b-3p 1 0 0
chr5:10391552|10391694 hsa-miR-93-3p 0 1 0
chr5:10391552|10391694 hsa-miR-6734-5p 1 0 0
chr5:10391552|10391694 hsa-miR-4433a-3p 1 0 0
chr5:10391552|10391694 hsa-miR-3150a-3p 1 0 0
chr5:10391552|10391694 hsa-miR-7106-5p 1 1 0
chr5:10391552|10391694 hsa-miR-6825-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6894-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6799-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6510-5p 1 0 0
chr5:10391552|10391694 hsa-miR-766-5p 1 1 0
chr5:10391552|10391694 hsa-miR-5187-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6880-5p 1 0 0
chr5:10391552|10391694 hsa-miR-7847-3p 1 1 0
chr5:10391552|10391694 hsa-miR-4695-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6744-5p 1 1 0
chr5:10391552|10391694 hsa-miR-4709-3p 1 0 0
chr5:10391552|10391694 hsa-miR-4722-5p 1 0 0
chr5:10391552|10391694 hsa-miR-7154-3p 1 1 0
chr5:10391552|10391694 hsa-miR-4755-3p 1 0 0
chr5:10391552|10391694 hsa-miR-4728-3p 0 1 0
chr5:10391552|10391694 hsa-miR-6783-5p 0 1 0
chr5:10391552|10391694 hsa-miR-3180-3p 1 0 0
chr5:10391552|10391694 hsa-miR-6772-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6732-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6805-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6798-5p 1 0 0
chr5:10391552|10391694 hsa-miR-1224-5p 1 0 0
chr5:10391552|10391694 hsa-miR-2467-3p 1 0 0
chr5:10391552|10391694 hsa-miR-6782-5p 1 0 0
chr5:10391552|10391694 hsa-miR-3150b-3p 1 0 0
chr5:10391552|10391694 hsa-miR-6810-5p 1 0 0
chr5:10391552|10391694 hsa-miR-4640-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6753-5p 1 0 0
chr5:10391552|10391694 hsa-miR-877-5p 1 0 0
chr5:10391552|10391694 hsa-miR-3616-3p 1 0 0
chr5:10391552|10391694 hsa-miR-6824-5p 1 0 0
chr5:10391552|10391694 hsa-miR-5010-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6895-5p 1 0 0
chr5:10391552|10391694 hsa-miR-1233-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6778-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6787-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6870-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6893-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6737-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6743-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6851-5p 1 0 0
chr5:10391552|10391694 hsa-miR-11181-3p 1 1 0
chr5:10391552|10391694 hsa-miR-1249-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6797-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6808-5p 1 0 0
chr5:10391552|10391694 hsa-miR-7111-5p 1 1 0
chr5:10391552|10391694 hsa-miR-6780b-5p 1 0 0
chr5:10391552|10391694 hsa-miR-10526-3p 1 0 0
chr5:10391552|10391694 hsa-miR-1237-5p 1 0 0
chr5:10391552|10391694 hsa-miR-4725-3p 1 0 0
chr5:10391552|10391694 hsa-miR-6729-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6738-5p 1 0 0
chr5:10391552|10391694 hsa-miR-675-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6794-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6858-5p 1 1 0
chr5:10391552|10391694 hsa-miR-4723-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6831-5p 1 1 0
chr5:10391552|10391694 hsa-miR-4758-5p 1 0 0
chr5:10391552|10391694 hsa-miR-1910-3p 1 1 0
chr5:10391552|10391694 hsa-miR-6511a-5p 1 1 0
chr5:10391552|10391694 hsa-miR-6758-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6856-5p 1 0 0
chr5:10391552|10391694 hsa-miR-4665-5p 1 0 0
chr5:10391552|10391694 hsa-miR-3173-3p 1 0 0
chr5:10391552|10391694 hsa-miR-3679-5p 1 0 0
chr5:10391552|10391694 hsa-miR-6891-5p 0 1 0
chr5:10391552|10391694 hsa-miR-4716-3p 1 1 0
chr5:10391552|10391694 hsa-miR-1234-3p 0 1 0
chr5:10391552|10391694 hsa-miR-10523-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:10391552|10391694
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MVILGIRVFPHHCVLSWWVSRLISSNIFCTIS
Nucleotide Sequence CTGGTCATCCTGGGCATCAGGGTTTTCCCCCACCACTGCGTTCTCAGCTGGTGGGTTAGCAGGCTGATCAGCAGCAACATTTTCTGCACCATTTCC
CircID chr5:10391552|10391694
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MSSSSSSAWSSWASGFSPTTAFSAGGLAG
Nucleotide Sequence TTGTCCTCCTCCTCCTCTTCTGCCTGGTCATCCTGGGCATCAGGGTTTTCCCCCACCACTGCGTTCTCAGCTGGTGGGTTAGCAGGCTGA
CircID chr5:10391552|10391694
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MVQKMLLLISLLTHQLRTQWWGKTLMPRMTRQKRRRRTMRRKMTL
Nucleotide Sequence ATGGTGCAGAAAATGTTGCTGCTGATCAGCCTGCTAACCCACCAGCTGAGAACGCAGTGGTGGGGGAAAACCCTGATGCCCAGGATGACCAGGCAGAAGAGGAGGAGGAGGACAATGAGGAGGAAGATGACGCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab