CircRNA Information

General Information
circRNA Basic Information
CircID chr5:1056621|1056772
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCTCACCCGGGGTCAGAGCCAGACCCTAAAGCCAGGTTCTCAGGAAGGGCTGGGGGCTCCTGGGCCCTGTGGGGTGGGATGAGGCGGCGTCCTCCTGGGCAGCCATGCGATCTGGAACAGCCTGGTGCTCTCTCCTGAAGTCAGTAACACA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:1056621|1056772 hsa-miR-29a-5p 0 0 1
chr5:1056621|1056772 hsa-miR-29a-3p 0 0 1
chr5:1056621|1056772 hsa-miR-146a-5p 0 0 1
chr5:1056621|1056772 hsa-miR-146a-3p 0 0 1
chr5:1056621|1056772 hsa-miR-149-5p 0 0 1
chr5:1056621|1056772 hsa-miR-149-3p 0 0 1
chr5:1056621|1056772 hsa-miR-185-5p 0 0 1
chr5:1056621|1056772 hsa-miR-185-3p 0 0 1
chr5:1056621|1056772 hsa-miR-29c-5p 0 0 1
chr5:1056621|1056772 hsa-miR-29c-3p 0 0 1
chr5:1056621|1056772 hsa-miR-589-5p 0 0 1
chr5:1056621|1056772 hsa-miR-589-3p 0 0 1
chr5:1056621|1056772 hsa-miR-604 0 0 1
chr5:1056621|1056772 hsa-miR-617 0 0 1
chr5:1056621|1056772 hsa-miR-647 0 0 1
chr5:1056621|1056772 hsa-miR-665 0 1 1
chr5:1056621|1056772 hsa-miR-760 0 1 1
chr5:1056621|1056772 hsa-miR-1182 0 0 1
chr5:1056621|1056772 hsa-miR-1200 0 0 1
chr5:1056621|1056772 hsa-miR-1225-3p 0 1 1
chr5:1056621|1056772 hsa-miR-490-3p 0 0 1
chr5:1056621|1056772 hsa-miR-525-5p 0 0 1
chr5:1056621|1056772 hsa-miR-361-3p 0 1 1
chr5:1056621|1056772 hsa-miR-1224-3p 0 0 1
chr5:1056621|1056772 hsa-miR-520a-5p 0 0 1
chr5:1056621|1056772 hsa-miR-146b-5p 0 0 1
chr5:1056621|1056772 hsa-miR-1260 0 0 1
chr5:1056621|1056772 hsa-miR-1280 0 0 1
chr5:1056621|1056772 hsa-miR-220c 0 0 1
chr5:1056621|1056772 hsa-miR-129-3p 0 0 1
chr5:1056621|1056772 hsa-miR-29b 0 0 1
chr5:1056621|1056772 hsa-miR-638 1 0 0
chr5:1056621|1056772 hsa-miR-1538 1 0 0
chr5:1056621|1056772 hsa-miR-4324 0 1 0
chr5:1056621|1056772 hsa-miR-3943 1 1 0
chr5:1056621|1056772 hsa-miR-4739 1 0 0
chr5:1056621|1056772 hsa-miR-4741 1 0 0
chr5:1056621|1056772 hsa-miR-6072 0 1 0
chr5:1056621|1056772 hsa-miR-9899 1 1 0
chr5:1056621|1056772 hsa-miR-6840-3p 0 1 0
chr5:1056621|1056772 hsa-miR-4687-3p 0 1 0
chr5:1056621|1056772 hsa-miR-3663-3p 1 1 0
chr5:1056621|1056772 hsa-miR-4722-5p 0 1 0
chr5:1056621|1056772 hsa-miR-593-5p 1 0 0
chr5:1056621|1056772 hsa-miR-6765-3p 1 0 0
chr5:1056621|1056772 hsa-miR-4793-5p 0 1 0
chr5:1056621|1056772 hsa-miR-6771-5p 1 0 0
chr5:1056621|1056772 hsa-miR-889-5p 0 1 0
chr5:1056621|1056772 hsa-miR-7160-3p 0 1 0
chr5:1056621|1056772 hsa-miR-6870-3p 0 1 0
chr5:1056621|1056772 hsa-miR-1180-3p 1 0 0
chr5:1056621|1056772 hsa-miR-3180-5p 1 1 0
chr5:1056621|1056772 hsa-miR-758-5p 0 1 0
chr5:1056621|1056772 hsa-miR-28-5p 0 1 0
chr5:1056621|1056772 hsa-miR-6812-3p 1 0 0
chr5:1056621|1056772 hsa-miR-1915-3p 0 1 0
chr5:1056621|1056772 hsa-miR-1909-3p 1 0 0
chr5:1056621|1056772 hsa-miR-6773-5p 0 1 0
chr5:1056621|1056772 hsa-miR-6753-3p 0 1 0
chr5:1056621|1056772 hsa-miR-6891-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:1056621|1056772
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MGPVGWDEAASSWAAMRSGTAWCSLLKSVT
Nucleotide Sequence CTGGGCCCTGTGGGGTGGGATGAGGCGGCGTCCTCCTGGGCAGCCATGCGATCTGGAACAGCCTGGTGCTCTCTCCTGAAGTCAGTAACA
CircID chr5:1056621|1056772
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MAAQEDAASSHPTGPRSPQPFLRTWL
Nucleotide Sequence ATGGCTGCCCAGGAGGACGCCGCCTCATCCCACCCCACAGGGCCCAGGAGCCCCCAGCCCTTCCTGAGAACCTGGCTTTAG
CircID chr5:1056621|1056772
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MTSGESTRLFQIAWLPRRTPPHPTPQGPGAPSPS
Nucleotide Sequence CTGACTTCAGGAGAGAGCACCAGGCTGTTCCAGATCGCATGGCTGCCCAGGAGGACGCCGCCTCATCCCACCCCACAGGGCCCAGGAGCCCCCAGCCCTTCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab