CircRNA Information

General Information
circRNA Basic Information
CircID chr5:109713520|109716264
Strand +
CircType exon
Host Gene ENSG00000112893.9;
Algorism find_circ;CIRI2;DCC;
Sequence GGCCAGCTCTCAATGTTGCAAGAAAAAATAGACCATTTGGAGCGTTTGCTAGCTGAGAATAATGAGATCATCTCAAATATTAGAGACTCAGTCATCAATTTGAGTGAGTCTGTGGAGGATGGTCCGAAAAGTTCACAAAGCAATTTCAGCCAAGGTGCTGGCTCACATCTTCTGCCCTCACAATTATCCCTCTCAGTTGACACTGCAGACTGTCTGTTTGCTTCACAAAGTGGAAGTCACAATTCAGATGTGCAGATTTGACCTGATGTCTGTTCTGACTTGATGTTGGATGTTTACAGTCTAATTTCTTTTGACAATCCAGATGGTGGAGTTTGGAAGCAAGGATTTGACATTACTTATGAATCTAATGAATGGGACACTGAACCCCTTCAAGTCTTTGTGGTGCCTCATTCCCATAACGACCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:109713520|109716264 hsa-miR-18a-5p 0 0 1
chr5:109713520|109716264 hsa-miR-18a-3p 0 0 1
chr5:109713520|109716264 hsa-miR-26b-5p 0 0 1
chr5:109713520|109716264 hsa-miR-26b-3p 0 0 1
chr5:109713520|109716264 hsa-miR-224-5p 0 0 1
chr5:109713520|109716264 hsa-miR-224-3p 0 0 1
chr5:109713520|109716264 hsa-miR-149-5p 0 0 1
chr5:109713520|109716264 hsa-miR-149-3p 0 0 1
chr5:109713520|109716264 hsa-miR-18b-5p 0 0 1
chr5:109713520|109716264 hsa-miR-18b-3p 0 0 1
chr5:109713520|109716264 hsa-miR-489-5p 0 0 1
chr5:109713520|109716264 hsa-miR-489-3p 0 0 1
chr5:109713520|109716264 hsa-miR-520g-5p 0 0 1
chr5:109713520|109716264 hsa-miR-520g-3p 0 0 1
chr5:109713520|109716264 hsa-miR-520h 0 0 1
chr5:109713520|109716264 hsa-miR-551a 0 0 1
chr5:109713520|109716264 hsa-miR-551b-5p 0 0 1
chr5:109713520|109716264 hsa-miR-551b-3p 0 0 1
chr5:109713520|109716264 hsa-miR-580-5p 0 0 1
chr5:109713520|109716264 hsa-miR-580-3p 0 0 1
chr5:109713520|109716264 hsa-miR-621 0 0 1
chr5:109713520|109716264 hsa-miR-627-5p 0 0 1
chr5:109713520|109716264 hsa-miR-627-3p 0 0 1
chr5:109713520|109716264 hsa-miR-1264 0 0 1
chr5:109713520|109716264 hsa-miR-765 0 0 1
chr5:109713520|109716264 hsa-miR-924 0 0 1
chr5:109713520|109716264 hsa-miR-1297 0 0 1
chr5:109713520|109716264 hsa-miR-1303 0 0 1
chr5:109713520|109716264 hsa-miR-1282 0 0 1
chr5:109713520|109716264 hsa-miR-513b-5p 0 0 1
chr5:109713520|109716264 hsa-miR-513b-3p 0 0 1
chr5:109713520|109716264 hsa-miR-671-5p 1 0 1
chr5:109713520|109716264 hsa-miR-212-5p 0 1 1
chr5:109713520|109716264 hsa-miR-330-3p 0 0 1
chr5:109713520|109716264 hsa-miR-188-5p 0 0 1
chr5:109713520|109716264 hsa-miR-576-3p 0 0 1
chr5:109713520|109716264 hsa-miR-582-5p 0 0 1
chr5:109713520|109716264 hsa-miR-409-3p 0 0 1
chr5:109713520|109716264 hsa-miR-324-3p 0 0 1
chr5:109713520|109716264 hsa-miR-1302 0 0 1
chr5:109713520|109716264 hsa-miR-509-3-5p 0 1 1
chr5:109713520|109716264 hsa-miR-509-5p 0 1 1
chr5:109713520|109716264 hsa-miR-371-5p 0 0 1
chr5:109713520|109716264 hsa-miR-642 0 0 1
chr5:109713520|109716264 hsa-miR-26a 0 0 1
chr5:109713520|109716264 hsa-miR-323-3p 0 0 1
chr5:109713520|109716264 hsa-miR-514 0 0 1
chr5:109713520|109716264 hsa-miR-24 0 0 1
chr5:109713520|109716264 hsa-miR-768-5p 0 0 1
chr5:109713520|109716264 hsa-miR-768-3p 0 0 1
chr5:109713520|109716264 hsa-miR-1293 1 1 0
chr5:109713520|109716264 hsa-miR-1262 0 1 0
chr5:109713520|109716264 hsa-miR-4284 0 1 0
chr5:109713520|109716264 hsa-miR-3907 1 0 0
chr5:109713520|109716264 hsa-miR-4657 0 1 0
chr5:109713520|109716264 hsa-miR-5194 1 0 0
chr5:109713520|109716264 hsa-miR-12114 1 0 0
chr5:109713520|109716264 hsa-miR-12115 0 1 0
chr5:109713520|109716264 hsa-miR-12117 0 1 0
chr5:109713520|109716264 hsa-miR-29a-5p 0 1 0
chr5:109713520|109716264 hsa-miR-323a-5p 1 0 0
chr5:109713520|109716264 hsa-miR-3157-5p 0 1 0
chr5:109713520|109716264 hsa-miR-6894-5p 1 1 0
chr5:109713520|109716264 hsa-miR-7114-5p 0 1 0
chr5:109713520|109716264 hsa-miR-1225-3p 1 0 0
chr5:109713520|109716264 hsa-miR-6880-5p 1 1 0
chr5:109713520|109716264 hsa-miR-7847-3p 1 1 0
chr5:109713520|109716264 hsa-miR-3605-5p 0 1 0
chr5:109713520|109716264 hsa-miR-6796-5p 1 0 0
chr5:109713520|109716264 hsa-miR-3190-3p 0 1 0
chr5:109713520|109716264 hsa-miR-6740-3p 0 1 0
chr5:109713520|109716264 hsa-miR-6786-5p 1 0 0
chr5:109713520|109716264 hsa-miR-5580-5p 0 1 0
chr5:109713520|109716264 hsa-miR-4684-3p 1 1 0
chr5:109713520|109716264 hsa-miR-6781-5p 1 0 0
chr5:109713520|109716264 hsa-miR-6877-5p 1 0 0
chr5:109713520|109716264 hsa-miR-5010-5p 1 0 0
chr5:109713520|109716264 hsa-miR-3120-5p 0 1 0
chr5:109713520|109716264 hsa-miR-3140-3p 0 1 0
chr5:109713520|109716264 hsa-miR-6738-3p 0 1 0
chr5:109713520|109716264 hsa-miR-1178-3p 0 1 0
chr5:109713520|109716264 hsa-miR-30d-3p 0 1 0
chr5:109713520|109716264 hsa-miR-96-5p 0 1 0
chr5:109713520|109716264 hsa-miR-6756-5p 1 0 0
chr5:109713520|109716264 hsa-miR-6763-5p 1 0 0
chr5:109713520|109716264 hsa-miR-6797-5p 1 0 0
chr5:109713520|109716264 hsa-miR-675-5p 1 0 0
chr5:109713520|109716264 hsa-miR-6848-5p 1 0 0
chr5:109713520|109716264 hsa-miR-6855-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr5:109713520|109716264
ORF Type ORF1
Protein Length 49
Nucleotide Length 150
Protein Sequence MDCQKKLDCKHPTSAHLNCDFHFVKQTDSLQCQLRGIIVRAEDVSQHLG
Nucleotide Sequence CTGGATTGTCAAAAGAAATTAGACTGTAAACATCCAACATCTGCACATCTGAATTGTGACTTCCACTTTGTGAAGCAAACAGACAGTCTGCAGTGTCAACTGAGAGGGATAATTGTGAGGGCAGAAGATGTGAGCCAGCACCTTGGCTGA

CircID chr5:109713520|109716264
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence MGMRHHKDLKGFSVPFIRFISNVKSLLPNSTIWIVKRN
Nucleotide Sequence ATGGGAATGAGGCACCACAAAGACTTGAAGGGGTTCAGTGTCCCATTCATTAGATTCATAAGTAATGTCAAATCCTTGCTTCCAAACTCCACCATCTGGATTGTCAAAAGAAATTAG

CircID chr5:109713520|109716264
ORF Type ORF3
Protein Length 49
Nucleotide Length 147
Protein Sequence MKLLCELFGPSSTDSLKLMTESLIFEMISLFSASKRSKWSIFSCNIESW
Nucleotide Sequence CTGAAATTGCTTTGTGAACTTTTCGGACCATCCTCCACAGACTCACTCAAATTGATGACTGAGTCTCTAATATTTGAGATGATCTCATTATTCTCAGCTAGCAAACGCTCCAAATGGTCTATTTTTTCTTGCAACATTGAGAGCTGG

CircID chr5:109713520|109716264
ORF Type ORF4
Protein Length 129
Nucleotide Length 387
Protein Sequence MLQEKIDHLERLLAENNEIISNIRDSVINLSESVEDGPKSSQSNFSQGAGSHLLPSQLSLSVDTADCLFASQSGSHNSDVQMLDVYSLISFDNPDGGVWKQGFDITYESNEWDTEPLQVFVVPHSHNDP
Nucleotide Sequence ATGTTGCAAGAAAAAATAGACCATTTGGAGCGTTTGCTAGCTGAGAATAATGAGATCATCTCAAATATTAGAGACTCAGTCATCAATTTGAGTGAGTCTGTGGAGGATGGTCCGAAAAGTTCACAAAGCAATTTCAGCCAAGGTGCTGGCTCACATCTTCTGCCCTCACAATTATCCCTCTCAGTTGACACTGCAGACTGTCTGTTTGCTTCACAAAGTGGAAGTCACAATTCAGATGTGCAGATGTTGGATGTTTACAGTCTAATTTCTTTTGACAATCCAGATGGTGGAGTTTGGAAGCAAGGATTTGACATTACTTATGAATCTAATGAATGGGACACTGAACCCCTTCAAGTCTTTGTGGTGCCTCATTCCCATAACGACCCA

CircID chr5:109713520|109716264
ORF Type ORF5
Protein Length 55
Nucleotide Length 168
Protein Sequence MWRMVRKVHKAISAKVLAHIFCPHNYPSQLTLQTVCLLHKVEVTIQMCRCWMFTV
Nucleotide Sequence CTGTGGAGGATGGTCCGAAAAGTTCACAAAGCAATTTCAGCCAAGGTGCTGGCTCACATCTTCTGCCCTCACAATTATCCCTCTCAGTTGACACTGCAGACTGTCTGTTTGCTTCACAAAGTGGAAGTCACAATTCAGATGTGCAGATGTTGGATGTTTACAGTCTAA

CircID chr5:109713520|109716264
ORF Type ORF6
Protein Length 39
Nucleotide Length 117
Protein Sequence MTIQMVEFGSKDLTLLMNLMNGTLNPFKSLWCLIPITTQ
Nucleotide Sequence TTGACAATCCAGATGGTGGAGTTTGGAAGCAAGGATTTGACATTACTTATGAATCTAATGAATGGGACACTGAACCCCTTCAAGTCTTTGTGGTGCCTCATTCCCATAACGACCCAG

CircID chr5:109713520|109716264
ORF Type ORF7
Protein Length 25
Nucleotide Length 78
Protein Sequence MSVCFTKWKSQFRCADVGCLQSNFF
Nucleotide Sequence CTGTCTGTTTGCTTCACAAAGTGGAAGTCACAATTCAGATGTGCAGATGTTGGATGTTTACAGTCTAATTTCTTTTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr5:109713520|109716264 U2AF2 8 5 0
chr5:109713520|109716264 MOV10 0 0 1
chr5:109713520|109716264 ELAVL1 6 2 0
chr5:109713520|109716264 CPSF7 1 0 0
chr5:109713520|109716264 YTHDF1 0 1 0
chr5:109713520|109716264 FMR1 0 0 1
chr5:109713520|109716264 NUDT21 0 2 0
chr5:109713520|109716264 FUS 2 1 0
chr5:109713520|109716264 SRSF7 0 0 1
chr5:109713520|109716264 SRSF1 0 0 1
chr5:109713520|109716264 NOP58 0 1 1
chr5:109713520|109716264 U2AF1 1 0 0
chr5:109713520|109716264 KHSRP 2 0 0
chr5:109713520|109716264 SRSF9 2 0 0
chr5:109713520|109716264 NOP56 0 2 0
chr5:109713520|109716264 DDX54 0 0 6
chr5:109713520|109716264 HNRNPK 0 1 0
chr5:109713520|109716264 PCBP2 0 0 1
chr5:109713520|109716264 SF3A3 2 0 0
chr5:109713520|109716264 FIP1L1 2 1 0
chr5:109713520|109716264 PTBP1 2 3 3
chr5:109713520|109716264 HNRNPC 5 4 0
chr5:109713520|109716264 HNRNPD 1 0 0
chr5:109713520|109716264 TRA2A 2 0 0
chr5:109713520|109716264 HNRNPA1 1 0 0
chr5:109713520|109716264 DDX3X 0 1 1
chr5:109713520|109716264 LARP7 0 0 1
chr5:109713520|109716264 SMNDC1 0 0 1
chr5:109713520|109716264 AUH 1 0 0
chr5:109713520|109716264 ACIN1 0 0 1
chr5:109713520|109716264 LIN28B 1 1 4
chr5:109713520|109716264 LIN28A 0 0 2
chr5:109713520|109716264 FXR2 1 0 1
chr5:109713520|109716264 SND1 1 2 2
chr5:109713520|109716264 IGF2BP1 3 0 9
chr5:109713520|109716264 IGF2BP3 1 0 2
chr5:109713520|109716264 IGF2BP2 2 2 9
chr5:109713520|109716264 MBNL2 2 0 0
chr5:109713520|109716264 TARDBP 3 0 0
chr5:109713520|109716264 BUD13 0 0 2
chr5:109713520|109716264 RBFOX2 1 0 0
chr5:109713520|109716264 RBM47 0 1 2
chr5:109713520|109716264 CSTF2T 1 0 1
chr5:109713520|109716264 BCCIP 1 0 0
chr5:109713520|109716264 CSTF2 7 5 0
chr5:109713520|109716264 RBM22 0 1 1
chr5:109713520|109716264 WDR33 1 0 0
chr5:109713520|109716264 EIF4A3 2 1 7
chr5:109713520|109716264 FBL 0 1 3