CircRNA Information

General Information
circRNA Basic Information
CircID chr5:111484323|111484532
Strand +
CircType exon
Host Gene ENSG00000152495.9;
Algorism CIRI2;
Sequence CTTTCTTGCTGAAGGACAAAGTACATAAAATGCCGGTGTTTGGCTTCCAGATCTGAAGGAAGCTGTTTAGTACTCTGGCAGGATCACATCTTGCTGTGGAACTTCAAAACCCACAGCAGAGCTTCCTTGCCCTTCTCTGGGAGCTGCTGCCTCCTCCACAGTCTTCAGCTTCTCCTCTGCTAGGCCCTCCTCTAGTTCCAGGTCAGCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:111484323|111484532 hsa-miR-205-5p 0 0 1
chr5:111484323|111484532 hsa-miR-205-3p 0 0 1
chr5:111484323|111484532 hsa-miR-545-5p 0 0 1
chr5:111484323|111484532 hsa-miR-545-3p 0 0 1
chr5:111484323|111484532 hsa-miR-573 0 0 1
chr5:111484323|111484532 hsa-miR-619-5p 0 0 1
chr5:111484323|111484532 hsa-miR-619-3p 0 0 1
chr5:111484323|111484532 hsa-miR-629-5p 0 0 1
chr5:111484323|111484532 hsa-miR-629-3p 0 0 1
chr5:111484323|111484532 hsa-miR-631 0 0 1
chr5:111484323|111484532 hsa-miR-646 0 1 1
chr5:111484323|111484532 hsa-miR-650 1 1 1
chr5:111484323|111484532 hsa-miR-765 1 1 1
chr5:111484323|111484532 hsa-miR-877-5p 0 0 1
chr5:111484323|111484532 hsa-miR-877-3p 0 0 1
chr5:111484323|111484532 hsa-miR-1299 0 0 1
chr5:111484323|111484532 hsa-miR-1827 0 1 1
chr5:111484323|111484532 hsa-miR-671-5p 0 0 1
chr5:111484323|111484532 hsa-miR-576-3p 0 0 1
chr5:111484323|111484532 hsa-miR-875-3p 0 0 1
chr5:111484323|111484532 hsa-miR-516a-3p 0 1 1
chr5:111484323|111484532 hsa-miR-596 1 0 0
chr5:111484323|111484532 hsa-miR-601 1 0 0
chr5:111484323|111484532 hsa-miR-658 1 0 0
chr5:111484323|111484532 hsa-miR-759 0 1 0
chr5:111484323|111484532 hsa-miR-298 1 0 0
chr5:111484323|111484532 hsa-miR-1268a 1 0 0
chr5:111484323|111484532 hsa-miR-2861 1 0 0
chr5:111484323|111484532 hsa-miR-3125 1 0 0
chr5:111484323|111484532 hsa-miR-3131 1 0 0
chr5:111484323|111484532 hsa-miR-3135a 1 0 0
chr5:111484323|111484532 hsa-miR-3154 0 1 0
chr5:111484323|111484532 hsa-miR-3176 1 1 0
chr5:111484323|111484532 hsa-miR-3661 1 1 0
chr5:111484323|111484532 hsa-miR-3916 1 0 0
chr5:111484323|111484532 hsa-miR-3919 0 1 0
chr5:111484323|111484532 hsa-miR-3945 1 0 0
chr5:111484323|111484532 hsa-miR-1268b 1 0 0
chr5:111484323|111484532 hsa-miR-3135b 1 0 0
chr5:111484323|111484532 hsa-miR-4498 1 0 0
chr5:111484323|111484532 hsa-miR-4505 1 0 0
chr5:111484323|111484532 hsa-miR-4539 1 0 0
chr5:111484323|111484532 hsa-miR-4660 0 1 0
chr5:111484323|111484532 hsa-miR-4688 1 0 0
chr5:111484323|111484532 hsa-miR-4689 1 0 0
chr5:111484323|111484532 hsa-miR-4779 0 1 0
chr5:111484323|111484532 hsa-miR-4784 1 1 0
chr5:111484323|111484532 hsa-miR-6088 1 0 0
chr5:111484323|111484532 hsa-miR-6125 1 0 0
chr5:111484323|111484532 hsa-miR-9718 1 0 0
chr5:111484323|111484532 hsa-miR-11399 1 1 0
chr5:111484323|111484532 hsa-miR-12115 0 1 0
chr5:111484323|111484532 hsa-miR-12118 1 0 0
chr5:111484323|111484532 hsa-miR-6734-5p 1 0 0
chr5:111484323|111484532 hsa-miR-3194-3p 0 1 0
chr5:111484323|111484532 hsa-miR-6825-5p 1 0 0
chr5:111484323|111484532 hsa-miR-6894-5p 1 0 0
chr5:111484323|111484532 hsa-miR-4687-3p 1 0 0
chr5:111484323|111484532 hsa-miR-6510-5p 1 1 0
chr5:111484323|111484532 hsa-miR-7114-5p 0 1 0
chr5:111484323|111484532 hsa-miR-6515-5p 0 1 0
chr5:111484323|111484532 hsa-miR-6880-5p 1 0 0
chr5:111484323|111484532 hsa-miR-7847-3p 1 1 0
chr5:111484323|111484532 hsa-miR-4695-5p 1 1 0
chr5:111484323|111484532 hsa-miR-6746-5p 1 0 0
chr5:111484323|111484532 hsa-miR-4709-3p 1 0 0
chr5:111484323|111484532 hsa-miR-4677-5p 0 1 0
chr5:111484323|111484532 hsa-miR-3605-5p 1 0 0
chr5:111484323|111484532 hsa-miR-6772-5p 1 0 0
chr5:111484323|111484532 hsa-miR-6793-5p 0 1 0
chr5:111484323|111484532 hsa-miR-1224-5p 1 0 0
chr5:111484323|111484532 hsa-miR-6770-5p 0 1 0
chr5:111484323|111484532 hsa-miR-6760-5p 1 0 0
chr5:111484323|111484532 hsa-miR-2467-3p 1 1 0
chr5:111484323|111484532 hsa-miR-3156-5p 1 1 0
chr5:111484323|111484532 hsa-miR-3150b-3p 1 1 0
chr5:111484323|111484532 hsa-miR-6888-5p 1 0 0
chr5:111484323|111484532 hsa-miR-5088-5p 1 0 0
chr5:111484323|111484532 hsa-miR-185-5p 1 0 0
chr5:111484323|111484532 hsa-miR-4786-3p 0 1 0
chr5:111484323|111484532 hsa-miR-4640-5p 1 0 0
chr5:111484323|111484532 hsa-let-7d-5p 0 1 0
chr5:111484323|111484532 hsa-miR-4690-5p 1 0 0
chr5:111484323|111484532 hsa-miR-6749-5p 1 0 0
chr5:111484323|111484532 hsa-miR-6847-5p 1 1 0
chr5:111484323|111484532 hsa-miR-149-3p 1 0 0
chr5:111484323|111484532 hsa-miR-6824-5p 1 0 0
chr5:111484323|111484532 hsa-let-7g-5p 0 1 0
chr5:111484323|111484532 hsa-miR-6878-5p 1 0 0
chr5:111484323|111484532 hsa-miR-3120-3p 0 1 0
chr5:111484323|111484532 hsa-miR-7158-3p 1 0 0
chr5:111484323|111484532 hsa-miR-4761-5p 0 1 0
chr5:111484323|111484532 hsa-miR-520g-5p 0 1 0
chr5:111484323|111484532 hsa-miR-10400-5p 1 0 0
chr5:111484323|111484532 hsa-miR-4763-3p 1 0 0
chr5:111484323|111484532 hsa-miR-7107-5p 1 0 0
chr5:111484323|111484532 hsa-miR-11181-3p 0 1 0
chr5:111484323|111484532 hsa-miR-1249-5p 1 0 0
chr5:111484323|111484532 hsa-miR-6780a-5p 1 0 0
chr5:111484323|111484532 hsa-miR-6797-5p 1 0 0
chr5:111484323|111484532 hsa-miR-6879-5p 0 1 0
chr5:111484323|111484532 hsa-miR-3620-5p 1 0 0
chr5:111484323|111484532 hsa-miR-4728-5p 1 0 0
chr5:111484323|111484532 hsa-miR-6780b-5p 1 0 0
chr5:111484323|111484532 hsa-miR-328-5p 1 0 0
chr5:111484323|111484532 hsa-miR-4649-5p 1 0 0
chr5:111484323|111484532 hsa-miR-6795-5p 1 0 0
chr5:111484323|111484532 hsa-miR-6858-5p 1 1 0
chr5:111484323|111484532 hsa-miR-6883-5p 1 0 0
chr5:111484323|111484532 hsa-miR-6887-5p 1 0 0
chr5:111484323|111484532 hsa-miR-6885-5p 1 0 0
chr5:111484323|111484532 hsa-miR-939-5p 0 1 0
chr5:111484323|111484532 hsa-miR-6758-5p 0 1 0
chr5:111484323|111484532 hsa-miR-6856-5p 0 1 0
chr5:111484323|111484532 hsa-miR-3116 0 1 0
chr5:111484323|111484532 hsa-miR-6785-5p 1 0 0
chr5:111484323|111484532 hsa-miR-5591-5p 0 1 0
chr5:111484323|111484532 hsa-miR-4756-5p 1 0 0
chr5:111484323|111484532 hsa-miR-516b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:111484323|111484532
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence MASRSEGSCLVLWQDHILLWNFKTHSRASLPFSGSCCLLHSLQLLLC
Nucleotide Sequence TTGGCTTCCAGATCTGAAGGAAGCTGTTTAGTACTCTGGCAGGATCACATCTTGCTGTGGAACTTCAAAACCCACAGCAGAGCTTCCTTGCCCTTCTCTGGGAGCTGCTGCCTCCTCCACAGTCTTCAGCTTCTCCTCTGCTAG
CircID chr5:111484323|111484532
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MFSTLAGSHLAVELQNPQQSFLALLWELLPPPQSSASPLLGPPLVPGQP
Nucleotide Sequence CTGTTTAGTACTCTGGCAGGATCACATCTTGCTGTGGAACTTCAAAACCCACAGCAGAGCTTCCTTGCCCTTCTCTGGGAGCTGCTGCCTCCTCCACAGTCTTCAGCTTCTCCTCTGCTAGGCCCTCCTCTAGTTCCAGGTCAGCCA
CircID chr5:111484323|111484532
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MELEEGLAEEKLKTVEEAAAPREGQGSSAVGFEVPQQDVILPEY
Nucleotide Sequence CTGGAACTAGAGGAGGGCCTAGCAGAGGAGAAGCTGAAGACTGTGGAGGAGGCAGCAGCTCCCAGAGAAGGGCAAGGAAGCTCTGCTGTGGGTTTTGAAGTTCCACAGCAAGATGTGATCCTGCCAGAGTACTAA
CircID chr5:111484323|111484532
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MWRRQQLPEKGKEALLWVLKFHSKM
Nucleotide Sequence CTGTGGAGGAGGCAGCAGCTCCCAGAGAAGGGCAAGGAAGCTCTGCTGTGGGTTTTGAAGTTCCACAGCAAGATGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab