CircRNA Information

General Information
circRNA Basic Information
CircID chr5:112838738|112838936
Strand +
CircType exon
Host Gene ENSG00000134982.15;
Algorism CIRI2;
Sequence TCGATTTGTTTCTGAACCATTGGCTCCCCGTGACCTGTATGGAGAAACACATTCCTGCTGTCCAAAATGTGGTTGGAACTTGAGGTGTTTATCATCAGTGCTCTCAGTATAAACAGGATAAGTTGTACTTTGATTCCTTGATTGTCTTTGCTCACTTTGTTTTATTTCATCTTCTATTATGTGTTTGGGTCTTGCCCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:112838738|112838936 hsa-miR-31-5p 0 0 1
chr5:112838738|112838936 hsa-miR-31-3p 0 0 1
chr5:112838738|112838936 hsa-miR-214-5p 0 0 1
chr5:112838738|112838936 hsa-miR-214-3p 0 0 1
chr5:112838738|112838936 hsa-miR-136-5p 0 0 1
chr5:112838738|112838936 hsa-miR-136-3p 0 0 1
chr5:112838738|112838936 hsa-miR-206 0 0 1
chr5:112838738|112838936 hsa-miR-520g-5p 0 0 1
chr5:112838738|112838936 hsa-miR-520g-3p 0 0 1
chr5:112838738|112838936 hsa-miR-520h 0 0 1
chr5:112838738|112838936 hsa-miR-552-5p 0 0 1
chr5:112838738|112838936 hsa-miR-552-3p 0 0 1
chr5:112838738|112838936 hsa-miR-613 0 0 1
chr5:112838738|112838936 hsa-miR-939-5p 0 0 1
chr5:112838738|112838936 hsa-miR-939-3p 0 0 1
chr5:112838738|112838936 hsa-miR-548k 0 0 1
chr5:112838738|112838936 hsa-miR-515-5p 0 0 1
chr5:112838738|112838936 hsa-miR-1 0 0 1
chr5:112838738|112838936 hsa-miR-662 1 0 0
chr5:112838738|112838936 hsa-miR-1272 0 1 0
chr5:112838738|112838936 hsa-miR-3138 1 0 0
chr5:112838738|112838936 hsa-miR-3147 1 0 0
chr5:112838738|112838936 hsa-miR-4281 1 0 0
chr5:112838738|112838936 hsa-miR-4502 0 1 0
chr5:112838738|112838936 hsa-miR-4518 1 0 0
chr5:112838738|112838936 hsa-miR-3973 0 1 0
chr5:112838738|112838936 hsa-miR-4706 1 0 0
chr5:112838738|112838936 hsa-miR-6165 1 0 0
chr5:112838738|112838936 hsa-miR-6825-5p 1 0 0
chr5:112838738|112838936 hsa-miR-6827-5p 0 1 0
chr5:112838738|112838936 hsa-miR-1908-5p 1 0 0
chr5:112838738|112838936 hsa-miR-3648 1 0 0
chr5:112838738|112838936 hsa-miR-7850-5p 0 1 0
chr5:112838738|112838936 hsa-miR-1225-5p 1 0 0
chr5:112838738|112838936 hsa-miR-6761-5p 0 1 0
chr5:112838738|112838936 hsa-miR-5001-5p 1 0 0
chr5:112838738|112838936 hsa-miR-6726-5p 1 0 0
chr5:112838738|112838936 hsa-miR-328-5p 1 0 0
chr5:112838738|112838936 hsa-miR-4632-5p 1 0 0
chr5:112838738|112838936 hsa-miR-4749-5p 1 0 0
chr5:112838738|112838936 hsa-miR-6777-5p 1 1 0
chr5:112838738|112838936 hsa-miR-6795-5p 1 0 0
chr5:112838738|112838936 hsa-miR-6887-5p 1 0 0
chr5:112838738|112838936 hsa-miR-6889-5p 1 1 0
chr5:112838738|112838936 hsa-miR-4723-5p 1 0 0
chr5:112838738|112838936 hsa-miR-10394-5p 1 0 0
chr5:112838738|112838936 hsa-miR-4676-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:112838738|112838936
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MLSKMWLELEVFIISALSINRISCTLIP
Nucleotide Sequence CTGCTGTCCAAAATGTGGTTGGAACTTGAGGTGTTTATCATCAGTGCTCTCAGTATAAACAGGATAAGTTGTACTTTGATTCCTTGA
CircID chr5:112838738|112838936
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MAPRDLYGETHSCCPKCGWNLRCLSSVLSV
Nucleotide Sequence TTGGCTCCCCGTGACCTGTATGGAGAAACACATTCCTGCTGTCCAAAATGTGGTTGGAACTTGAGGTGTTTATCATCAGTGCTCTCAGTATAA
CircID chr5:112838738|112838936
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MFLNHWLPVTCMEKHIPAVQNVVGT
Nucleotide Sequence TTGTTTCTGAACCATTGGCTCCCCGTGACCTGTATGGAGAAACACATTCCTGCTGTCCAAAATGTGGTTGGAACTTGA
CircID chr5:112838738|112838936
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MYFDSLIVFAHFVLFHLLLCVWVLP
Nucleotide Sequence TTGTACTTTGATTCCTTGATTGTCTTTGCTCACTTTGTTTTATTTCATCTTCTATTATGTGTTTGGGTCTTGCCC
CircID chr5:112838738|112838936
ORF Type ORF5
Protein Length 38
Nucleotide Length 114
Protein Sequence MFILRALMINTSSSNHILDSRNVFLHTGHGEPMVQKQI
Nucleotide Sequence CTGTTTATACTGAGAGCACTGATGATAAACACCTCAAGTTCCAACCACATTTTGGACAGCAGGAATGTGTTTCTCCATACAGGTCACGGGGAGCCAATGGTTCAGAAACAAATC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab