CircRNA Information

General Information
circRNA Basic Information
CircID chr5:123545417|123557564
Strand +
CircType exon
Host Gene ENSG00000151292.17;
Algorism find_circ;CIRI2;DCC;
Sequence CTCTCTATCAATATCAGCTCACATCATTGAAAAGATAATTTTGAAGACATGTTTTGCTGAAAAGACACTAAGAAAAATTTTACGAATGGGATGAACATGCTCCAGTTAATTGACTACCTACTGCAATTTGAATGTTAACATTACCCATCTGGTACAGTTACCTAGTGATGTACCTATTTTCACAATACCCTGTTTCAGTGTGCTTGTCTTGATTAAAGAATTCAAAGTGGAGTACCGCAAACTTGATATGGAAAATAAAAAGAAAGACAAGGACAAATCAGATGATAGAATGGCACGACCTAGTGGTCGATCGGGACACAACACTCGAGGAACTGGGTCTTCATCGTCTGGAGTTTTAATGGTTGGACCTAACTTTAGAGTTGGAAAAAAAATTGGATGTGGCAATTTTGGAGAATTACGATTAGACCAGAGGGAGAAACCCGAAGGCTGTCAGGGTACCTCTGCATCCTTAATATGTGACTTCCGTCTCTGTGCACAAGCTTATATTTAACTCAAGATATTTGGAATTAATTTTGTTGTAAGGGAAAAATTTATACACAAATGAATATGTGGCAATTAAGTTGGAGCCCATGAAATCAAGAGCACCACAGCTACATTTGGAATACAGATTCTATAAGCAGTTAGGATCTGGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:123545417|123557564 hsa-miR-29a-5p 0 0 1
chr5:123545417|123557564 hsa-miR-29a-3p 0 0 1
chr5:123545417|123557564 hsa-miR-10a-5p 0 0 1
chr5:123545417|123557564 hsa-miR-10a-3p 0 0 1
chr5:123545417|123557564 hsa-miR-10b-5p 0 0 1
chr5:123545417|123557564 hsa-miR-10b-3p 0 0 1
chr5:123545417|123557564 hsa-miR-183-5p 0 0 1
chr5:123545417|123557564 hsa-miR-183-3p 0 0 1
chr5:123545417|123557564 hsa-miR-217-5p 0 0 1
chr5:123545417|123557564 hsa-miR-217-3p 0 0 1
chr5:123545417|123557564 hsa-miR-221-5p 0 0 1
chr5:123545417|123557564 hsa-miR-221-3p 0 0 1
chr5:123545417|123557564 hsa-miR-222-5p 0 0 1
chr5:123545417|123557564 hsa-miR-222-3p 0 0 1
chr5:123545417|123557564 hsa-miR-186-5p 0 0 1
chr5:123545417|123557564 hsa-miR-186-3p 0 0 1
chr5:123545417|123557564 hsa-miR-29c-5p 0 0 1
chr5:123545417|123557564 hsa-miR-29c-3p 0 0 1
chr5:123545417|123557564 hsa-miR-382-5p 0 0 1
chr5:123545417|123557564 hsa-miR-382-3p 0 0 1
chr5:123545417|123557564 hsa-miR-335-5p 0 0 1
chr5:123545417|123557564 hsa-miR-335-3p 0 0 1
chr5:123545417|123557564 hsa-miR-431-5p 0 0 1
chr5:123545417|123557564 hsa-miR-431-3p 0 0 1
chr5:123545417|123557564 hsa-miR-511-5p 0 0 1
chr5:123545417|123557564 hsa-miR-511-3p 0 0 1
chr5:123545417|123557564 hsa-miR-492 0 0 1
chr5:123545417|123557564 hsa-miR-520g-5p 0 0 1
chr5:123545417|123557564 hsa-miR-520g-3p 0 0 1
chr5:123545417|123557564 hsa-miR-520h 0 0 1
chr5:123545417|123557564 hsa-miR-564 0 0 1
chr5:123545417|123557564 hsa-miR-571 0 0 1
chr5:123545417|123557564 hsa-miR-611 0 0 1
chr5:123545417|123557564 hsa-miR-620 0 0 1
chr5:123545417|123557564 hsa-miR-636 0 0 1
chr5:123545417|123557564 hsa-miR-641 0 0 1
chr5:123545417|123557564 hsa-miR-648 0 0 1
chr5:123545417|123557564 hsa-miR-651-5p 0 0 1
chr5:123545417|123557564 hsa-miR-651-3p 0 0 1
chr5:123545417|123557564 hsa-miR-660-5p 0 0 1
chr5:123545417|123557564 hsa-miR-660-3p 0 0 1
chr5:123545417|123557564 hsa-miR-708-5p 0 0 1
chr5:123545417|123557564 hsa-miR-708-3p 0 0 1
chr5:123545417|123557564 hsa-miR-190b-5p 0 0 1
chr5:123545417|123557564 hsa-miR-190b-3p 0 0 1
chr5:123545417|123557564 hsa-miR-543 0 0 1
chr5:123545417|123557564 hsa-miR-935 0 0 1
chr5:123545417|123557564 hsa-miR-1303 0 0 1
chr5:123545417|123557564 hsa-miR-1258 0 0 1
chr5:123545417|123557564 hsa-miR-1270 0 0 1
chr5:123545417|123557564 hsa-miR-513b-5p 0 0 1
chr5:123545417|123557564 hsa-miR-513b-3p 0 0 1
chr5:123545417|123557564 hsa-miR-140-5p 0 0 1
chr5:123545417|123557564 hsa-miR-145-5p 0 0 1
chr5:123545417|123557564 hsa-miR-299-3p 0 0 1
chr5:123545417|123557564 hsa-miR-193a-5p 0 0 1
chr5:123545417|123557564 hsa-miR-28-5p 0 0 1
chr5:123545417|123557564 hsa-miR-582-5p 0 0 1
chr5:123545417|123557564 hsa-miR-140-3p 0 0 1
chr5:123545417|123557564 hsa-miR-628-5p 0 0 1
chr5:123545417|123557564 hsa-miR-509-3-5p 0 0 1
chr5:123545417|123557564 hsa-miR-509-5p 0 0 1
chr5:123545417|123557564 hsa-miR-590-3p 0 0 1
chr5:123545417|123557564 hsa-miR-151-5p 0 0 1
chr5:123545417|123557564 hsa-miR-1274b 0 0 1
chr5:123545417|123557564 hsa-miR-323-3p 0 0 1
chr5:123545417|123557564 hsa-miR-218 0 0 1
chr5:123545417|123557564 hsa-miR-516b 0 0 1
chr5:123545417|123557564 hsa-miR-768-5p 0 0 1
chr5:123545417|123557564 hsa-miR-768-3p 0 0 1
chr5:123545417|123557564 hsa-miR-29b 0 0 1
chr5:123545417|123557564 hsa-miR-1245 0 0 1
chr5:123545417|123557564 hsa-miR-190 0 0 1
chr5:123545417|123557564 hsa-miR-1265 1 0 0
chr5:123545417|123557564 hsa-miR-1268a 1 0 0
chr5:123545417|123557564 hsa-miR-3122 1 0 0
chr5:123545417|123557564 hsa-miR-3131 1 0 0
chr5:123545417|123557564 hsa-miR-3147 1 0 0
chr5:123545417|123557564 hsa-miR-3148 0 1 0
chr5:123545417|123557564 hsa-miR-4259 1 0 0
chr5:123545417|123557564 hsa-miR-1268b 1 0 0
chr5:123545417|123557564 hsa-miR-4535 0 1 0
chr5:123545417|123557564 hsa-miR-4658 1 0 0
chr5:123545417|123557564 hsa-miR-6124 1 0 0
chr5:123545417|123557564 hsa-miR-6127 1 0 0
chr5:123545417|123557564 hsa-miR-8053 1 1 0
chr5:123545417|123557564 hsa-miR-150-3p 0 1 0
chr5:123545417|123557564 hsa-miR-6747-5p 1 0 0
chr5:123545417|123557564 hsa-miR-6728-5p 0 1 0
chr5:123545417|123557564 hsa-miR-6833-5p 1 1 0
chr5:123545417|123557564 hsa-miR-3663-3p 0 1 0
chr5:123545417|123557564 hsa-miR-3928-3p 0 1 0
chr5:123545417|123557564 hsa-miR-6727-5p 1 0 0
chr5:123545417|123557564 hsa-miR-432-5p 1 0 0
chr5:123545417|123557564 hsa-miR-6782-5p 1 0 0
chr5:123545417|123557564 hsa-miR-6853-5p 1 0 0
chr5:123545417|123557564 hsa-miR-4764-5p 1 0 0
chr5:123545417|123557564 hsa-miR-3074-3p 0 1 0
chr5:123545417|123557564 hsa-miR-296-3p 1 0 0
chr5:123545417|123557564 hsa-miR-1245b-3p 0 1 0
chr5:123545417|123557564 hsa-miR-6792-5p 0 1 0
chr5:123545417|123557564 hsa-miR-1911-5p 1 1 0
chr5:123545417|123557564 hsa-miR-338-5p 0 1 0
chr5:123545417|123557564 hsa-miR-4444 1 0 0
chr5:123545417|123557564 hsa-miR-5003-5p 0 1 0
chr5:123545417|123557564 hsa-miR-6775-5p 1 0 0
chr5:123545417|123557564 hsa-miR-6756-5p 1 0 0
chr5:123545417|123557564 hsa-miR-6851-5p 1 0 0
chr5:123545417|123557564 hsa-miR-1238-5p 1 0 0
chr5:123545417|123557564 hsa-miR-4758-5p 1 0 0
chr5:123545417|123557564 hsa-miR-5009-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:123545417|123557564
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MPHIHLCINFSLIVILQNCHIQFFFQL
Nucleotide Sequence TTGCCACATATTCATTTGTGTATAAATTTTTCCCTAATCGTAATTCTCCAAAATTGCCACATCCAATTTTTTTTCCAACTCTAA
CircID chr5:123545417|123557564
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MYQMGNVNIQIAVGSQLTGACSSHS
Nucleotide Sequence CTGTACCAGATGGGTAATGTTAACATTCAAATTGCAGTAGGTAGTCAATTAACTGGAGCATGTTCATCCCATTCGTAA
CircID chr5:123545417|123557564
ORF Type ORF3
Protein Length 130
Nucleotide Length 393
Protein Sequence MYSKCSCGALDFMGSNLIATYSFVYKFFPNRNSPKLPHPIFFPTLKLGPTIKTPDDEDPVPRVLCPDRPLGRAILSSDLSLSFFLFSISSLRYSTLNSLIKTSTLKQGIVKIGTSLGNCTRWVMLTFKLQ
Nucleotide Sequence CTGTATTCCAAATGTAGCTGTGGTGCTCTTGATTTCATGGGCTCCAACTTAATTGCCACATATTCATTTGTGTATAAATTTTTCCCTAATCGTAATTCTCCAAAATTGCCACATCCAATTTTTTTTCCAACTCTAAAGTTAGGTCCAACCATTAAAACTCCAGACGATGAAGACCCAGTTCCTCGAGTGTTGTGTCCCGATCGACCACTAGGTCGTGCCATTCTATCATCTGATTTGTCCTTGTCTTTCTTTTTATTTTCCATATCAAGTTTGCGGTACTCCACTTTGAATTCTTTAATCAAGACAAGCACACTGAAACAGGGTATTGTGAAAATAGGTACATCACTAGGTAACTGTACCAGATGGGTAATGTTAACATTCAAATTGCAGTAG
CircID chr5:123545417|123557564
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MEHVHPIRKIFLSVFSAKHVFKIIFSMM
Nucleotide Sequence CTGGAGCATGTTCATCCCATTCGTAAAATTTTTCTTAGTGTCTTTTCAGCAAAACATGTCTTCAAAATTATCTTTTCAATGATGTGA
CircID chr5:123545417|123557564
ORF Type ORF5
Protein Length 142
Nucleotide Length 426
Protein Sequence MTTYCNLNVNITHLVQLPSDVPIFTIPCFSVLVLIKEFKVEYRKLDMENKKKDKDKSDDRMARPSGRSGHNTRGTGSSSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSG
Nucleotide Sequence TTGACTACCTACTGCAATTTGAATGTTAACATTACCCATCTGGTACAGTTACCTAGTGATGTACCTATTTTCACAATACCCTGTTTCAGTGTGCTTGTCTTGATTAAAGAATTCAAAGTGGAGTACCGCAAACTTGATATGGAAAATAAAAAGAAAGACAAGGACAAATCAGATGATAGAATGGCACGACCTAGTGGTCGATCGGGACACAACACTCGAGGAACTGGGTCTTCATCGTCTGGAGTTTTAATGGTTGGACCTAACTTTAGAGTTGGAAAAAAAATTGGATGTGGCAATTTTGGAGAATTACGATTAGGGAAAAATTTATACACAAATGAATATGTGGCAATTAAGTTGGAGCCCATGAAATCAAGAGCACCACAGCTACATTTGGAATACAGATTCTATAAGCAGTTAGGATCTGGA
CircID chr5:123545417|123557564
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence MLTLPIWYSYLVMYLFSQYPVSVCLS
Nucleotide Sequence ATGTTAACATTACCCATCTGGTACAGTTACCTAGTGATGTACCTATTTTCACAATACCCTGTTTCAGTGTGCTTGTCTTGA
CircID chr5:123545417|123557564
ORF Type ORF7
Protein Length 38
Nucleotide Length 117
Protein Sequence MIWKIKRKTRTNQMIEWHDLVVDRDTTLEELGLHRLEF
Nucleotide Sequence TTGATATGGAAAATAAAAAGAAAGACAAGGACAAATCAGATGATAGAATGGCACGACCTAGTGGTCGATCGGGACACAACACTCGAGGAACTGGGTCTTCATCGTCTGGAGTTTTAA
CircID chr5:123545417|123557564
ORF Type ORF1
Protein Length 107
Nucleotide Length 324
Protein Sequence MISWAPNRNSPKLPHPIFFPTLKLGPTIKTPDDEDPVPRVLCPDRPLGRAILSSDLSLSFFLFSISSLRYSTLNSLIKTSTLKQGIVKIGTSLGNCTRWVMLTFKLQ
Nucleotide Sequence TTGATTTCATGGGCTCCTAATCGTAATTCTCCAAAATTGCCACATCCAATTTTTTTTCCAACTCTAAAGTTAGGTCCAACCATTAAAACTCCAGACGATGAAGACCCAGTTCCTCGAGTGTTGTGTCCCGATCGACCACTAGGTCGTGCCATTCTATCATCTGATTTGTCCTTGTCTTTCTTTTTATTTTCCATATCAAGTTTGCGGTACTCCACTTTGAATTCTTTAATCAAGACAAGCACACTGAAACAGGGTATTGTGAAAATAGGTACATCACTAGGTAACTGTACCAGATGGGTAATGTTAACATTCAAATTGCAGTAG
CircID chr5:123545417|123557564
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MEHVHPIRKIFLSVFSAKHVFKIIFSMM
Nucleotide Sequence CTGGAGCATGTTCATCCCATTCGTAAAATTTTTCTTAGTGTCTTTTCAGCAAAACATGTCTTCAAAATTATCTTTTCAATGATGTGA
CircID chr5:123545417|123557564
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MYQMGNVNIQIAVGSQLTGACSSHS
Nucleotide Sequence CTGTACCAGATGGGTAATGTTAACATTCAAATTGCAGTAGGTAGTCAATTAACTGGAGCATGTTCATCCCATTCGTAA
CircID chr5:123545417|123557564
ORF Type ORF4
Protein Length 122
Nucleotide Length 369
Protein Sequence MTTYCNLNVNITHLVQLPSDVPIFTIPCFSVLVLIKEFKVEYRKLDMENKKKDKDKSDDRMARPSGRSGHNTRGTGSSSSGVLMVGPNFRVGKKIGCGNFGELRLGAHEIKSTTATFGIQIL
Nucleotide Sequence TTGACTACCTACTGCAATTTGAATGTTAACATTACCCATCTGGTACAGTTACCTAGTGATGTACCTATTTTCACAATACCCTGTTTCAGTGTGCTTGTCTTGATTAAAGAATTCAAAGTGGAGTACCGCAAACTTGATATGGAAAATAAAAAGAAAGACAAGGACAAATCAGATGATAGAATGGCACGACCTAGTGGTCGATCGGGACACAACACTCGAGGAACTGGGTCTTCATCGTCTGGAGTTTTAATGGTTGGACCTAACTTTAGAGTTGGAAAAAAAATTGGATGTGGCAATTTTGGAGAATTACGATTAGGAGCCCATGAAATCAAGAGCACCACAGCTACATTTGGAATACAGATTCTATAA
CircID chr5:123545417|123557564
ORF Type ORF5
Protein Length 26
Nucleotide Length 81
Protein Sequence MLTLPIWYSYLVMYLFSQYPVSVCLS
Nucleotide Sequence ATGTTAACATTACCCATCTGGTACAGTTACCTAGTGATGTACCTATTTTCACAATACCCTGTTTCAGTGTGCTTGTCTTGA
CircID chr5:123545417|123557564
ORF Type ORF6
Protein Length 38
Nucleotide Length 117
Protein Sequence MIWKIKRKTRTNQMIEWHDLVVDRDTTLEELGLHRLEF
Nucleotide Sequence TTGATATGGAAAATAAAAAGAAAGACAAGGACAAATCAGATGATAGAATGGCACGACCTAGTGGTCGATCGGGACACAACACTCGAGGAACTGGGTCTTCATCGTCTGGAGTTTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr5:123545417|123557564 U2AF2 8 14 3
chr5:123545417|123557564 ELAVL1 5 9 1
chr5:123545417|123557564 CNBP 0 0 1
chr5:123545417|123557564 UPF1 0 0 1
chr5:123545417|123557564 TAF15 1 0 0
chr5:123545417|123557564 FMR1 0 0 6
chr5:123545417|123557564 FUS 1 0 0
chr5:123545417|123557564 SRSF1 0 0 4
chr5:123545417|123557564 NOP58 2 0 9
chr5:123545417|123557564 NOP56 1 0 1
chr5:123545417|123557564 DDX54 2 0 8
chr5:123545417|123557564 HNRNPL 0 1 1
chr5:123545417|123557564 PTBP1 0 1 2
chr5:123545417|123557564 HNRNPC 8 3 0
chr5:123545417|123557564 HNRNPD 0 1 0
chr5:123545417|123557564 TRA2A 0 0 1
chr5:123545417|123557564 DDX3X 1 0 2
chr5:123545417|123557564 ZC3H7B 0 1 0
chr5:123545417|123557564 SMNDC1 0 0 1
chr5:123545417|123557564 HNRNPA1 0 1 0
chr5:123545417|123557564 LIN28B 0 5 4
chr5:123545417|123557564 LIN28A 0 0 2
chr5:123545417|123557564 FXR2 0 0 2
chr5:123545417|123557564 IGF2BP1 0 0 2
chr5:123545417|123557564 IGF2BP3 0 0 2
chr5:123545417|123557564 IGF2BP2 1 2 11
chr5:123545417|123557564 BUD13 0 0 1
chr5:123545417|123557564 RBFOX2 0 1 0
chr5:123545417|123557564 RBM47 0 0 2
chr5:123545417|123557564 CSTF2 2 3 0
chr5:123545417|123557564 AGO2 0 0 7
chr5:123545417|123557564 EIF4A3 1 3 6
chr5:123545417|123557564 FBL 0 0 4
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab