CircRNA Information

General Information
circRNA Basic Information
CircID chr5:133105269|133105539
Strand +
CircType exon
Host Gene ENSG00000170606.12;
Algorism CIRI2;
Sequence CTGACATTGGCCACACAGTTAAGAATGAGGTGTTGTTATAACATCAGGCACCACACTTCTTTAACACTAATTTCAGACTCATCCAGTACAATCCAGTGTATCTTAGTTTTTTTTGCATCATCTGTCAGCTGCTTAACACGTACAAATTGGCAGGTTCATGACAGATATTAACACTTAACACACAAGTGATTGTGAATGAGCTAAAAAGAACTTTTAACTCTTGTTCTAGGAGTTCAAGCTATACCTCAAAATTATACAGAACATCTCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:133105269|133105539 hsa-let-7b-5p 0 0 1
chr5:133105269|133105539 hsa-let-7b-3p 0 0 1
chr5:133105269|133105539 hsa-let-7c-5p 0 0 1
chr5:133105269|133105539 hsa-let-7c-3p 0 0 1
chr5:133105269|133105539 hsa-let-7d-5p 0 0 1
chr5:133105269|133105539 hsa-let-7d-3p 0 0 1
chr5:133105269|133105539 hsa-let-7e-5p 0 0 1
chr5:133105269|133105539 hsa-let-7e-3p 0 0 1
chr5:133105269|133105539 hsa-miR-98-5p 0 0 1
chr5:133105269|133105539 hsa-miR-98-3p 0 0 1
chr5:133105269|133105539 hsa-let-7g-5p 0 0 1
chr5:133105269|133105539 hsa-let-7g-3p 0 0 1
chr5:133105269|133105539 hsa-let-7i-5p 0 0 1
chr5:133105269|133105539 hsa-let-7i-3p 0 0 1
chr5:133105269|133105539 hsa-miR-186-5p 0 0 1
chr5:133105269|133105539 hsa-miR-186-3p 0 0 1
chr5:133105269|133105539 hsa-miR-34b-5p 0 0 1
chr5:133105269|133105539 hsa-miR-34b-3p 0 0 1
chr5:133105269|133105539 hsa-miR-202-5p 0 0 1
chr5:133105269|133105539 hsa-miR-202-3p 0 0 1
chr5:133105269|133105539 hsa-miR-568 0 0 1
chr5:133105269|133105539 hsa-miR-569 0 0 1
chr5:133105269|133105539 hsa-miR-581 0 0 1
chr5:133105269|133105539 hsa-miR-595 0 1 1
chr5:133105269|133105539 hsa-miR-627-5p 0 0 1
chr5:133105269|133105539 hsa-miR-627-3p 0 0 1
chr5:133105269|133105539 hsa-miR-646 0 0 1
chr5:133105269|133105539 hsa-miR-892a 0 0 1
chr5:133105269|133105539 hsa-miR-889-5p 0 0 1
chr5:133105269|133105539 hsa-miR-889-3p 0 0 1
chr5:133105269|133105539 hsa-miR-924 0 0 1
chr5:133105269|133105539 hsa-miR-663b 0 0 1
chr5:133105269|133105539 hsa-miR-1304-5p 0 0 1
chr5:133105269|133105539 hsa-miR-1304-3p 0 0 1
chr5:133105269|133105539 hsa-miR-1243 0 0 1
chr5:133105269|133105539 hsa-miR-1255a 0 0 1
chr5:133105269|133105539 hsa-miR-548n 0 0 1
chr5:133105269|133105539 hsa-miR-513b-5p 0 0 1
chr5:133105269|133105539 hsa-miR-513b-3p 0 0 1
chr5:133105269|133105539 hsa-miR-1322 0 0 1
chr5:133105269|133105539 hsa-miR-508-3p 0 0 1
chr5:133105269|133105539 hsa-miR-590-3p 0 0 1
chr5:133105269|133105539 hsa-miR-550 0 0 1
chr5:133105269|133105539 hsa-miR-1255b 0 0 1
chr5:133105269|133105539 hsa-miR-644 0 0 1
chr5:133105269|133105539 hsa-let-7a 0 0 1
chr5:133105269|133105539 hsa-let-7f 0 0 1
chr5:133105269|133105539 hsa-miR-768-3p 0 0 1
chr5:133105269|133105539 hsa-miR-1201 0 0 1
chr5:133105269|133105539 hsa-miR-147 0 0 1
chr5:133105269|133105539 hsa-miR-1275 1 0 0
chr5:133105269|133105539 hsa-miR-1321 1 0 0
chr5:133105269|133105539 hsa-miR-3660 0 1 0
chr5:133105269|133105539 hsa-miR-3689c 1 0 0
chr5:133105269|133105539 hsa-miR-4507 1 0 0
chr5:133105269|133105539 hsa-miR-4525 1 0 0
chr5:133105269|133105539 hsa-miR-4705 0 1 0
chr5:133105269|133105539 hsa-miR-8056 1 1 0
chr5:133105269|133105539 hsa-miR-8085 1 0 0
chr5:133105269|133105539 hsa-miR-210-3p 1 1 0
chr5:133105269|133105539 hsa-miR-215-3p 0 1 0
chr5:133105269|133105539 hsa-miR-6825-5p 1 0 0
chr5:133105269|133105539 hsa-miR-6799-5p 1 0 0
chr5:133105269|133105539 hsa-miR-4653-3p 0 1 0
chr5:133105269|133105539 hsa-miR-30b-3p 1 0 0
chr5:133105269|133105539 hsa-miR-30c-2-3p 1 0 0
chr5:133105269|133105539 hsa-miR-7154-5p 0 1 0
chr5:133105269|133105539 hsa-miR-5010-5p 1 0 0
chr5:133105269|133105539 hsa-miR-875-5p 0 1 0
chr5:133105269|133105539 hsa-miR-3689b-3p 1 0 0
chr5:133105269|133105539 hsa-miR-6726-5p 1 0 0
chr5:133105269|133105539 hsa-miR-6779-5p 1 0 0
chr5:133105269|133105539 hsa-miR-4728-5p 1 0 0
chr5:133105269|133105539 hsa-miR-3689a-3p 1 0 0
chr5:133105269|133105539 hsa-miR-4701-3p 1 0 0
chr5:133105269|133105539 hsa-miR-6846-5p 1 0 0
chr5:133105269|133105539 hsa-miR-30c-1-3p 1 0 0
chr5:133105269|133105539 hsa-miR-6731-5p 1 0 0
chr5:133105269|133105539 hsa-miR-4665-5p 1 0 0
chr5:133105269|133105539 hsa-miR-550a-5p 0 1 0
chr5:133105269|133105539 hsa-miR-590-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:133105269|133105539
ORF Type ORF1
Protein Length 56
Nucleotide Length 171
Protein Sequence LTLATQLRMRCCYNIRHHTSLTLISDSSSTIQCILVFFASSVSCLTRTNWQVHDRY
Nucleotide Sequence CTGACATTGGCCACACAGTTAAGAATGAGGTGTTGTTATAACATCAGGCACCACACTTCTTTAACACTAATTTCAGACTCATCCAGTACAATCCAGTGTATCTTAGTTTTTTTTGCATCATCTGTCAGCTGCTTAACACGTACAAATTGGCAGGTTCATGACAGATATTAA
CircID chr5:133105269|133105539
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MMQKKLRYTGLYWMSLKLVLKKCGA
Nucleotide Sequence ATGATGCAAAAAAAACTAAGATACACTGGATTGTACTGGATGAGTCTGAAATTAGTGTTAAAGAAGTGTGGTGCCTGA
CircID chr5:133105269|133105539
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MTDDAKKTKIHWIVLDESEISVKEVWCLML
Nucleotide Sequence CTGACAGATGATGCAAAAAAAACTAAGATACACTGGATTGTACTGGATGAGTCTGAAATTAGTGTTAAAGAAGTGTGGTGCCTGATGTTATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab