CircRNA Information

General Information
circRNA Basic Information
CircID chr5:133988985|133989232
Strand -
CircType exon
Host Gene ENSG00000213585.9;
Algorism CIRI2;
Sequence CGCTCCCTGATACCATGGCAGAGTTCCTGGGGGGAGAGTGCACAGCACTGCAAAAAGGCAGTGCTCTTGCAGGAGAAACTACAGCAGCGAAGAGGAATGAGAGTAAATCAGCCCCGTAACAATGGTCTCTTCAGATCATCTATAGCCAAGCTATAAGACGACATCTCCAGAGGATAGGAACCATGTGTGCCCAGTCACTTGTGTGCACTGCACACCCAGCACAGGTCTGCACTTGGTAGATCCTCCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:133988985|133989232 hsa-miR-148a-5p 0 0 1
chr5:133988985|133989232 hsa-miR-148a-3p 0 0 1
chr5:133988985|133989232 hsa-miR-152-5p 0 0 1
chr5:133988985|133989232 hsa-miR-152-3p 0 0 1
chr5:133988985|133989232 hsa-miR-134-5p 0 0 1
chr5:133988985|133989232 hsa-miR-134-3p 0 0 1
chr5:133988985|133989232 hsa-miR-148b-5p 0 0 1
chr5:133988985|133989232 hsa-miR-148b-3p 0 0 1
chr5:133988985|133989232 hsa-miR-335-5p 0 0 1
chr5:133988985|133989232 hsa-miR-335-3p 0 0 1
chr5:133988985|133989232 hsa-miR-507 0 0 1
chr5:133988985|133989232 hsa-miR-557 0 0 1
chr5:133988985|133989232 hsa-miR-609 0 0 1
chr5:133988985|133989232 hsa-miR-612 0 0 1
chr5:133988985|133989232 hsa-miR-620 0 0 1
chr5:133988985|133989232 hsa-miR-639 1 0 1
chr5:133988985|133989232 hsa-miR-873-5p 0 0 1
chr5:133988985|133989232 hsa-miR-873-3p 0 0 1
chr5:133988985|133989232 hsa-miR-1270 0 0 1
chr5:133988985|133989232 hsa-miR-1321 0 0 1
chr5:133988985|133989232 hsa-miR-129-5p 0 0 1
chr5:133988985|133989232 hsa-miR-512-3p 0 0 1
chr5:133988985|133989232 hsa-miR-361-3p 1 0 1
chr5:133988985|133989232 hsa-miR-337-3p 0 0 1
chr5:133988985|133989232 hsa-miR-519b-3p 0 0 1
chr5:133988985|133989232 hsa-miR-519c-3p 0 0 1
chr5:133988985|133989232 hsa-miR-450b-5p 0 0 1
chr5:133988985|133989232 hsa-miR-1285 0 0 1
chr5:133988985|133989232 hsa-miR-516b 0 0 1
chr5:133988985|133989232 hsa-miR-519a 0 0 1
chr5:133988985|133989232 hsa-miR-1913 1 0 0
chr5:133988985|133989232 hsa-miR-3655 1 0 0
chr5:133988985|133989232 hsa-miR-4469 1 0 0
chr5:133988985|133989232 hsa-miR-4492 1 0 0
chr5:133988985|133989232 hsa-miR-4508 1 0 0
chr5:133988985|133989232 hsa-miR-4689 1 0 0
chr5:133988985|133989232 hsa-miR-7703 1 0 0
chr5:133988985|133989232 hsa-miR-12119 1 0 0
chr5:133988985|133989232 hsa-miR-143-5p 1 0 0
chr5:133988985|133989232 hsa-miR-6749-3p 1 0 0
chr5:133988985|133989232 hsa-miR-6840-3p 1 0 0
chr5:133988985|133989232 hsa-miR-1247-3p 1 0 0
chr5:133988985|133989232 hsa-miR-6799-5p 1 0 0
chr5:133988985|133989232 hsa-miR-6840-5p 1 0 0
chr5:133988985|133989232 hsa-miR-6845-3p 1 0 0
chr5:133988985|133989232 hsa-miR-185-3p 1 0 0
chr5:133988985|133989232 hsa-miR-3944-3p 1 0 0
chr5:133988985|133989232 hsa-miR-3679-3p 1 0 0
chr5:133988985|133989232 hsa-miR-1236-3p 1 0 0
chr5:133988985|133989232 hsa-miR-6803-5p 1 0 0
chr5:133988985|133989232 hsa-miR-6813-5p 1 0 0
chr5:133988985|133989232 hsa-miR-10396a-3p 1 0 0
chr5:133988985|133989232 hsa-miR-10396b-3p 1 0 0
chr5:133988985|133989232 hsa-miR-2682-3p 1 0 0
chr5:133988985|133989232 hsa-miR-6784-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:133988985|133989232
ORF Type ORF1
Protein Length 49
Nucleotide Length 150
Protein Sequence MIPWQSSWGESAQHCKKAVLLQEKLQQRRGMRVNQPRNNGLFRSSIAKL
Nucleotide Sequence CTGATACCATGGCAGAGTTCCTGGGGGGAGAGTGCACAGCACTGCAAAAAGGCAGTGCTCTTGCAGGAGAAACTACAGCAGCGAAGAGGAATGAGAGTAAATCAGCCCCGTAACAATGGTCTCTTCAGATCATCTATAGCCAAGCTATAA
CircID chr5:133988985|133989232
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MAEFLGGECTALQKGSALAGETTAAKRNESKSAP
Nucleotide Sequence ATGGCAGAGTTCCTGGGGGGAGAGTGCACAGCACTGCAAAAAGGCAGTGCTCTTGCAGGAGAAACTACAGCAGCGAAGAGGAATGAGAGTAAATCAGCCCCGTAA
CircID chr5:133988985|133989232
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MGTHGSYPLEMSSYSLAIDDLKRPLLRG
Nucleotide Sequence CTGGGCACACATGGTTCCTATCCTCTGGAGATGTCGTCTTATAGCTTGGCTATAGATGATCTGAAGAGACCATTGTTACGGGGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab