CircRNA Information

General Information
circRNA Basic Information
CircID chr5:134579477|134579594
Strand -
CircType exon
Host Gene ENSG00000043143.19;
Algorism CIRI2;
Sequence ACTGTTGTCTTTCCTCTGTGCTGGCCTAGGACATTAGGATTCCTTCCACGGCTCCGGCCGCTAGGACCCTGCCAGGTCCCGCGCACCATCCCTGCCCTGCCCACGTGGTATTGCTGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:134579477|134579594 hsa-miR-492 0 0 1
chr5:134579477|134579594 hsa-miR-631 0 1 1
chr5:134579477|134579594 hsa-miR-675-5p 0 0 1
chr5:134579477|134579594 hsa-miR-675-3p 0 0 1
chr5:134579477|134579594 hsa-miR-1203 0 1 1
chr5:134579477|134579594 hsa-miR-1252-5p 0 0 1
chr5:134579477|134579594 hsa-miR-1252-3p 0 0 1
chr5:134579477|134579594 hsa-miR-1207-5p 1 1 1
chr5:134579477|134579594 hsa-miR-608 1 1 0
chr5:134579477|134579594 hsa-miR-612 1 0 0
chr5:134579477|134579594 hsa-miR-663a 1 0 0
chr5:134579477|134579594 hsa-miR-762 1 0 0
chr5:134579477|134579594 hsa-miR-3135a 1 0 0
chr5:134579477|134579594 hsa-miR-3147 1 0 0
chr5:134579477|134579594 hsa-miR-1193 0 1 0
chr5:134579477|134579594 hsa-miR-4292 1 0 0
chr5:134579477|134579594 hsa-miR-3649 0 1 0
chr5:134579477|134579594 hsa-miR-4449 1 0 0
chr5:134579477|134579594 hsa-miR-4466 1 0 0
chr5:134579477|134579594 hsa-miR-4507 1 0 0
chr5:134579477|134579594 hsa-miR-1587 1 0 0
chr5:134579477|134579594 hsa-miR-4688 1 0 0
chr5:134579477|134579594 hsa-miR-5090 1 0 0
chr5:134579477|134579594 hsa-miR-6132 1 1 0
chr5:134579477|134579594 hsa-miR-6860 1 1 0
chr5:134579477|134579594 hsa-miR-8078 1 0 0
chr5:134579477|134579594 hsa-miR-210-3p 1 0 0
chr5:134579477|134579594 hsa-miR-1972 1 0 0
chr5:134579477|134579594 hsa-miR-6089 1 0 0
chr5:134579477|134579594 hsa-miR-6757-5p 0 1 0
chr5:134579477|134579594 hsa-miR-3677-5p 0 1 0
chr5:134579477|134579594 hsa-miR-6727-5p 1 0 0
chr5:134579477|134579594 hsa-miR-6721-5p 0 1 0
chr5:134579477|134579594 hsa-miR-770-5p 1 1 0
chr5:134579477|134579594 hsa-miR-197-5p 1 0 0
chr5:134579477|134579594 hsa-miR-7108-5p 1 0 0
chr5:134579477|134579594 hsa-miR-3190-3p 1 0 0
chr5:134579477|134579594 hsa-miR-6821-5p 1 0 0
chr5:134579477|134579594 hsa-miR-1226-5p 1 0 0
chr5:134579477|134579594 hsa-miR-1229-5p 1 0 0
chr5:134579477|134579594 hsa-miR-1228-5p 1 1 0
chr5:134579477|134579594 hsa-miR-6847-5p 0 1 0
chr5:134579477|134579594 hsa-miR-4743-5p 0 1 0
chr5:134579477|134579594 hsa-miR-7112-5p 1 0 0
chr5:134579477|134579594 hsa-miR-6895-5p 1 0 0
chr5:134579477|134579594 hsa-miR-1199-3p 0 1 0
chr5:134579477|134579594 hsa-miR-10400-5p 1 0 0
chr5:134579477|134579594 hsa-miR-1233-5p 1 0 0
chr5:134579477|134579594 hsa-miR-4763-3p 1 1 0
chr5:134579477|134579594 hsa-miR-6816-5p 1 0 0
chr5:134579477|134579594 hsa-miR-6775-5p 1 0 0
chr5:134579477|134579594 hsa-miR-6743-5p 1 0 0
chr5:134579477|134579594 hsa-miR-6722-3p 1 0 0
chr5:134579477|134579594 hsa-miR-6774-5p 1 0 0
chr5:134579477|134579594 hsa-miR-6779-5p 1 0 0
chr5:134579477|134579594 hsa-miR-6797-5p 1 0 0
chr5:134579477|134579594 hsa-miR-6808-5p 1 0 0
chr5:134579477|134579594 hsa-miR-6879-5p 1 1 0
chr5:134579477|134579594 hsa-miR-3620-5p 1 0 0
chr5:134579477|134579594 hsa-miR-6780b-5p 1 0 0
chr5:134579477|134579594 hsa-miR-6836-5p 1 1 0
chr5:134579477|134579594 hsa-miR-10396a-5p 1 0 0
chr5:134579477|134579594 hsa-miR-10396b-5p 1 0 0
chr5:134579477|134579594 hsa-miR-1237-5p 1 0 0
chr5:134579477|134579594 hsa-miR-328-5p 1 0 0
chr5:134579477|134579594 hsa-miR-4632-5p 1 1 0
chr5:134579477|134579594 hsa-miR-6735-5p 0 1 0
chr5:134579477|134579594 hsa-miR-4758-5p 1 0 0
chr5:134579477|134579594 hsa-miR-6785-5p 1 0 0
chr5:134579477|134579594 hsa-miR-6837-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:134579477|134579594
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MCWPRTLGFLPRLRPLGPCQVPRTIPALPTWYCW
Nucleotide Sequence CTGTGCTGGCCTAGGACATTAGGATTCCTTCCACGGCTCCGGCCGCTAGGACCCTGCCAGGTCCCGCGCACCATCCCTGCCCTGCCCACGTGGTATTGCTGG
CircID chr5:134579477|134579594
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MVRGTWQGPSGRSRGRNPNVLGQHRGKTT
Nucleotide Sequence ATGGTGCGCGGGACCTGGCAGGGTCCTAGCGGCCGGAGCCGTGGAAGGAATCCTAATGTCCTAGGCCAGCACAGAGGAAAGACAACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab