CircRNA Information

General Information
circRNA Basic Information
CircID chr5:1349953|1350131
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGACATTTCTGTTGGGGCGCGGGCCCATCTCCTGCCCCGCTCATGTGGGGCTCAGTCTGCCCAACCTTTCCCCAAGGGCCTGTCTTTACTTCATTTGTGGTAAGCCCCAAGCAGAATGGACTCTTGTTATGATCCCAGGAACTGCTCACGGCCACCTCTGTGGATGAACACCTAGCGG
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:1349953|1350131 hsa-miR-638 0 0 1
chr5:1349953|1350131 hsa-miR-744-5p 0 0 1
chr5:1349953|1350131 hsa-miR-744-3p 0 0 1
chr5:1349953|1350131 hsa-miR-1206 0 0 1
chr5:1349953|1350131 hsa-miR-1225-3p 0 0 1
chr5:1349953|1350131 hsa-miR-296-5p 0 0 1
chr5:1349953|1350131 hsa-miR-486-3p 0 0 1
chr5:1349953|1350131 hsa-miR-140-3p 0 0 1
chr5:1349953|1350131 hsa-miR-769-3p 0 0 1
chr5:1349953|1350131 hsa-miR-450b-3p 0 1 1
chr5:1349953|1350131 hsa-miR-1233 0 0 1
chr5:1349953|1350131 hsa-miR-608 1 1 0
chr5:1349953|1350131 hsa-miR-637 1 0 0
chr5:1349953|1350131 hsa-miR-2110 1 1 0
chr5:1349953|1350131 hsa-miR-3147 0 1 0
chr5:1349953|1350131 hsa-miR-4323 0 1 0
chr5:1349953|1350131 hsa-miR-4257 0 1 0
chr5:1349953|1350131 hsa-miR-4494 0 1 0
chr5:1349953|1350131 hsa-miR-4514 1 0 0
chr5:1349953|1350131 hsa-miR-4688 0 1 0
chr5:1349953|1350131 hsa-miR-4706 1 0 0
chr5:1349953|1350131 hsa-miR-7974 1 0 0
chr5:1349953|1350131 hsa-miR-8089 1 0 0
chr5:1349953|1350131 hsa-miR-125b-2-3p 1 0 0
chr5:1349953|1350131 hsa-miR-4731-5p 1 0 0
chr5:1349953|1350131 hsa-miR-6857-5p 1 0 0
chr5:1349953|1350131 hsa-miR-4687-3p 1 0 0
chr5:1349953|1350131 hsa-miR-27a-5p 0 1 0
chr5:1349953|1350131 hsa-miR-4722-5p 0 1 0
chr5:1349953|1350131 hsa-miR-6730-5p 0 1 0
chr5:1349953|1350131 hsa-miR-197-5p 1 0 0
chr5:1349953|1350131 hsa-miR-3189-5p 1 0 0
chr5:1349953|1350131 hsa-miR-491-5p 1 0 0
chr5:1349953|1350131 hsa-miR-6810-5p 1 0 0
chr5:1349953|1350131 hsa-miR-5008-5p 1 1 0
chr5:1349953|1350131 hsa-miR-6852-5p 1 0 0
chr5:1349953|1350131 hsa-miR-4717-3p 1 0 0
chr5:1349953|1350131 hsa-miR-1292-3p 0 1 0
chr5:1349953|1350131 hsa-miR-6857-3p 0 1 0
chr5:1349953|1350131 hsa-miR-5699-5p 0 1 0
chr5:1349953|1350131 hsa-miR-4771 0 1 0
chr5:1349953|1350131 hsa-miR-4524b-3p 0 1 0
chr5:1349953|1350131 hsa-miR-4763-3p 0 1 0
chr5:1349953|1350131 hsa-miR-6812-5p 1 0 0
chr5:1349953|1350131 hsa-miR-6816-5p 1 0 0
chr5:1349953|1350131 hsa-miR-6775-5p 0 1 0
chr5:1349953|1350131 hsa-miR-1343-5p 1 0 0
chr5:1349953|1350131 hsa-miR-6737-5p 1 0 0
chr5:1349953|1350131 hsa-miR-6743-5p 1 0 0
chr5:1349953|1350131 hsa-miR-6756-5p 0 1 0
chr5:1349953|1350131 hsa-miR-6815-5p 0 1 0
chr5:1349953|1350131 hsa-miR-6763-5p 1 0 0
chr5:1349953|1350131 hsa-miR-6774-5p 0 1 0
chr5:1349953|1350131 hsa-miR-6780b-5p 1 1 0
chr5:1349953|1350131 hsa-miR-328-5p 1 0 0
chr5:1349953|1350131 hsa-miR-1199-5p 1 0 0
chr5:1349953|1350131 hsa-miR-6773-5p 0 1 0
chr5:1349953|1350131 hsa-miR-4665-5p 1 0 0
chr5:1349953|1350131 hsa-miR-4716-3p 1 0 0
chr5:1349953|1350131 hsa-miR-3184-5p 1 0 0
chr5:1349953|1350131 hsa-miR-6724-5p 1 1 0
chr5:1349953|1350131 hsa-miR-6791-5p 1 0 0
chr5:1349953|1350131 hsa-miR-619-5p 1 1 0
chr5:1349953|1350131 hsa-miR-548ao-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:1349953|1350131
ORF Type ORF1
Protein Length 55
Nucleotide Length 168
Protein Sequence LTFLLGRGPISCPAHVGLSLPNLSPRACLYFICGKPQAEWTLVMIPGTAHGHLCG
Nucleotide Sequence CTGACATTTCTGTTGGGGCGCGGGCCCATCTCCTGCCCCGCTCATGTGGGGCTCAGTCTGCCCAACCTTTCCCCAAGGGCCTGTCTTTACTTCATTTGTGGTAAGCCCCAAGCAGAATGGACTCTTGTTATGATCCCAGGAACTGCTCACGGCCACCTCTGTGGATGA
CircID chr5:1349953|1350131
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MWGSVCPTFPQGPVFTSFVVSPKQNGLLL
Nucleotide Sequence ATGTGGGGCTCAGTCTGCCCAACCTTTCCCCAAGGGCCTGTCTTTACTTCATTTGTGGTAAGCCCCAAGCAGAATGGACTCTTGTTATGA
CircID chr5:1349953|1350131
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MGLTTNEVKTGPWGKVGQTEPHMSGAGDGPAPQQKCQ
Nucleotide Sequence TTGGGGCTTACCACAAATGAAGTAAAGACAGGCCCTTGGGGAAAGGTTGGGCAGACTGAGCCCCACATGAGCGGGGCAGGAGATGGGCCCGCGCCCCAACAGAAATGTCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab