CircRNA Information

General Information
circRNA Basic Information
CircID chr5:135334519|135334727
Strand +
CircType exon
Host Gene ENSG00000113648.15;
Algorism CIRI2;
Sequence CTAGGAGATTTTATAGTTTTATTTTAATGAAACCCTGATTGACGCACAGCAGTGGGGAGAACAGCGTCTTTTACCTGTCACCGAAGCCAGGAAGCCCCGTTTGTAAGCGTGTGTTGTGGTGCTTTATTGTACATCCTCCAGTGGCGTTCTTTTTACTCTAATGTTCTTTTGGTTTCCCCCCTCAGAAGAATCATGAATTTGCAACAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:135334519|135334727 hsa-miR-29a-5p 0 0 1
chr5:135334519|135334727 hsa-miR-29a-3p 0 0 1
chr5:135334519|135334727 hsa-miR-210-5p 0 0 1
chr5:135334519|135334727 hsa-miR-210-3p 0 0 1
chr5:135334519|135334727 hsa-miR-29c-5p 0 0 1
chr5:135334519|135334727 hsa-miR-29c-3p 0 0 1
chr5:135334519|135334727 hsa-miR-433-5p 0 0 1
chr5:135334519|135334727 hsa-miR-433-3p 0 0 1
chr5:135334519|135334727 hsa-miR-527 0 0 1
chr5:135334519|135334727 hsa-miR-625-5p 0 0 1
chr5:135334519|135334727 hsa-miR-625-3p 0 0 1
chr5:135334519|135334727 hsa-miR-765 0 0 1
chr5:135334519|135334727 hsa-miR-548e-5p 0 0 1
chr5:135334519|135334727 hsa-miR-548e-3p 0 0 1
chr5:135334519|135334727 hsa-miR-1265 0 0 1
chr5:135334519|135334727 hsa-miR-1267 0 0 1
chr5:135334519|135334727 hsa-miR-423-5p 0 0 1
chr5:135334519|135334727 hsa-miR-338-5p 0 0 1
chr5:135334519|135334727 hsa-miR-524-5p 0 0 1
chr5:135334519|135334727 hsa-miR-518a-5p 0 0 1
chr5:135334519|135334727 hsa-miR-548a-3p 0 0 1
chr5:135334519|135334727 hsa-miR-542-3p 0 0 1
chr5:135334519|135334727 hsa-miR-516a-3p 0 0 1
chr5:135334519|135334727 hsa-miR-520d-5p 0 0 1
chr5:135334519|135334727 hsa-miR-548f 0 0 1
chr5:135334519|135334727 hsa-miR-29b 0 0 1
chr5:135334519|135334727 hsa-miR-2110 1 0 0
chr5:135334519|135334727 hsa-miR-4286 0 1 0
chr5:135334519|135334727 hsa-miR-3135b 1 0 0
chr5:135334519|135334727 hsa-miR-4525 1 0 0
chr5:135334519|135334727 hsa-miR-5090 1 0 0
chr5:135334519|135334727 hsa-miR-12119 1 1 0
chr5:135334519|135334727 hsa-miR-26b-3p 0 1 0
chr5:135334519|135334727 hsa-miR-6734-5p 1 1 0
chr5:135334519|135334727 hsa-miR-6765-5p 1 0 0
chr5:135334519|135334727 hsa-miR-6894-5p 1 1 0
chr5:135334519|135334727 hsa-miR-3663-3p 1 0 0
chr5:135334519|135334727 hsa-miR-6515-5p 1 1 0
chr5:135334519|135334727 hsa-miR-4653-3p 1 0 0
chr5:135334519|135334727 hsa-miR-23b-5p 1 0 0
chr5:135334519|135334727 hsa-miR-432-5p 1 0 0
chr5:135334519|135334727 hsa-miR-3605-5p 0 1 0
chr5:135334519|135334727 hsa-miR-7109-5p 1 0 0
chr5:135334519|135334727 hsa-miR-6784-5p 1 0 0
chr5:135334519|135334727 hsa-miR-5584-5p 0 1 0
chr5:135334519|135334727 hsa-miR-3158-3p 1 0 0
chr5:135334519|135334727 hsa-miR-5003-5p 0 1 0
chr5:135334519|135334727 hsa-miR-6865-5p 1 0 0
chr5:135334519|135334727 hsa-miR-6775-5p 1 0 0
chr5:135334519|135334727 hsa-miR-6819-5p 1 0 0
chr5:135334519|135334727 hsa-miR-7111-5p 1 0 0
chr5:135334519|135334727 hsa-miR-1237-5p 1 0 0
chr5:135334519|135334727 hsa-miR-328-5p 1 0 0
chr5:135334519|135334727 hsa-miR-6738-5p 1 0 0
chr5:135334519|135334727 hsa-miR-6795-5p 0 1 0
chr5:135334519|135334727 hsa-miR-6887-5p 1 1 0
chr5:135334519|135334727 hsa-miR-4723-5p 1 0 0
chr5:135334519|135334727 hsa-miR-1914-3p 1 0 0
chr5:135334519|135334727 hsa-miR-4716-3p 1 0 0
chr5:135334519|135334727 hsa-miR-7156-5p 0 1 0
chr5:135334519|135334727 hsa-miR-498-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:135334519|135334727
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MYILQWRSFYSNVLLVSPLRRIMNLQQ
Nucleotide Sequence TTGTACATCCTCCAGTGGCGTTCTTTTTACTCTAATGTTCTTTTGGTTTCCCCCCTCAGAAGAATCATGAATTTGCAACAG
CircID chr5:135334519|135334727
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MTHSSGENSVFYLSPKPGSPVCKRVLWCFIVHPPVAFFLL
Nucleotide Sequence TTGACGCACAGCAGTGGGGAGAACAGCGTCTTTTACCTGTCACCGAAGCCAGGAAGCCCCGTTTGTAAGCGTGTGTTGTGGTGCTTTATTGTACATCCTCCAGTGGCGTTCTTTTTACTCTAA
CircID chr5:135334519|135334727
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence LLQIHDSSEGGNQKNIRVKRTPLEDVQ
Nucleotide Sequence CTGTTGCAAATTCATGATTCTTCTGAGGGGGGAAACCAAAAGAACATTAGAGTAAAAAGAACGCCACTGGAGGATGTACAATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab