CircRNA Information

General Information
circRNA Basic Information
CircID chr5:138163314|138164350
Strand -
CircType exon
Host Gene ENSG00000112983.16;
Algorism CIRI2;
Sequence CATCTTCCTCCTCATCCTCACCTGGGGCATCCTTTATCTGGCTTCCAAAAATAGTCCCTGATTCTTCTTTCAATGAGTCTGCAGAGGAGAGAAAGACTACCTGAAGATTTTTCCACCTTAGCCTTCCCCTTCCTATGGACCATAATCCCCTGCAGCTCTCCTTTACATGCTGACCTGTTCTACCTCCTCTACTTGCCCACAACCCACAACCCCTCAGAAGCCAAAGCAAATGATTTCAAGTCAGTGAAAGAGGACTTTATTTACCTGACATTTCAAACTTGTGCTGAGTCTCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:138163314|138164350 hsa-let-7b-5p 0 0 1
chr5:138163314|138164350 hsa-let-7b-3p 0 0 1
chr5:138163314|138164350 hsa-let-7c-5p 0 0 1
chr5:138163314|138164350 hsa-let-7c-3p 0 0 1
chr5:138163314|138164350 hsa-let-7d-5p 0 0 1
chr5:138163314|138164350 hsa-let-7d-3p 0 0 1
chr5:138163314|138164350 hsa-let-7e-5p 0 0 1
chr5:138163314|138164350 hsa-let-7e-3p 0 0 1
chr5:138163314|138164350 hsa-miR-18a-5p 0 0 1
chr5:138163314|138164350 hsa-miR-18a-3p 0 0 1
chr5:138163314|138164350 hsa-miR-98-5p 0 0 1
chr5:138163314|138164350 hsa-miR-98-3p 0 0 1
chr5:138163314|138164350 hsa-let-7g-5p 0 0 1
chr5:138163314|138164350 hsa-let-7g-3p 0 0 1
chr5:138163314|138164350 hsa-let-7i-5p 0 0 1
chr5:138163314|138164350 hsa-let-7i-3p 0 0 1
chr5:138163314|138164350 hsa-miR-196b-5p 0 0 1
chr5:138163314|138164350 hsa-miR-196b-3p 0 0 1
chr5:138163314|138164350 hsa-miR-18b-5p 0 0 1
chr5:138163314|138164350 hsa-miR-18b-3p 0 0 1
chr5:138163314|138164350 hsa-miR-488-5p 0 0 1
chr5:138163314|138164350 hsa-miR-488-3p 0 0 1
chr5:138163314|138164350 hsa-miR-558 0 0 1
chr5:138163314|138164350 hsa-miR-577 0 0 1
chr5:138163314|138164350 hsa-miR-579-5p 0 0 1
chr5:138163314|138164350 hsa-miR-579-3p 0 0 1
chr5:138163314|138164350 hsa-miR-584-5p 0 0 1
chr5:138163314|138164350 hsa-miR-584-3p 0 0 1
chr5:138163314|138164350 hsa-miR-877-5p 0 0 1
chr5:138163314|138164350 hsa-miR-877-3p 0 0 1
chr5:138163314|138164350 hsa-miR-1205 0 0 1
chr5:138163314|138164350 hsa-miR-1255a 0 0 1
chr5:138163314|138164350 hsa-miR-512-5p 0 0 1
chr5:138163314|138164350 hsa-miR-671-5p 1 1 1
chr5:138163314|138164350 hsa-miR-125a-3p 0 1 1
chr5:138163314|138164350 hsa-miR-142-5p 0 0 1
chr5:138163314|138164350 hsa-miR-1184 0 0 1
chr5:138163314|138164350 hsa-miR-423-5p 1 0 1
chr5:138163314|138164350 hsa-miR-548c-3p 0 0 1
chr5:138163314|138164350 hsa-miR-1255b 0 0 1
chr5:138163314|138164350 hsa-let-7a 0 0 1
chr5:138163314|138164350 hsa-let-7f 0 0 1
chr5:138163314|138164350 hsa-miR-196a 0 0 1
chr5:138163314|138164350 hsa-miR-203 0 0 1
chr5:138163314|138164350 hsa-miR-1185 0 0 1
chr5:138163314|138164350 hsa-miR-608 1 0 0
chr5:138163314|138164350 hsa-miR-637 1 0 0
chr5:138163314|138164350 hsa-miR-765 1 1 0
chr5:138163314|138164350 hsa-miR-3132 1 0 0
chr5:138163314|138164350 hsa-miR-3141 1 0 0
chr5:138163314|138164350 hsa-miR-3154 1 0 0
chr5:138163314|138164350 hsa-miR-3196 1 0 0
chr5:138163314|138164350 hsa-miR-4296 1 0 0
chr5:138163314|138164350 hsa-miR-4322 1 0 0
chr5:138163314|138164350 hsa-miR-4253 1 0 0
chr5:138163314|138164350 hsa-miR-4265 1 0 0
chr5:138163314|138164350 hsa-miR-4270 1 0 0
chr5:138163314|138164350 hsa-miR-4271 1 1 0
chr5:138163314|138164350 hsa-miR-4450 1 0 0
chr5:138163314|138164350 hsa-miR-4476 0 1 0
chr5:138163314|138164350 hsa-miR-3689c 1 0 0
chr5:138163314|138164350 hsa-miR-4493 1 0 0
chr5:138163314|138164350 hsa-miR-2392 1 0 0
chr5:138163314|138164350 hsa-miR-4507 1 0 0
chr5:138163314|138164350 hsa-miR-4525 1 0 0
chr5:138163314|138164350 hsa-miR-1587 1 0 0
chr5:138163314|138164350 hsa-miR-4651 1 0 0
chr5:138163314|138164350 hsa-miR-4710 1 1 0
chr5:138163314|138164350 hsa-miR-4721 1 0 0
chr5:138163314|138164350 hsa-miR-4739 1 0 0
chr5:138163314|138164350 hsa-miR-5194 1 1 0
chr5:138163314|138164350 hsa-miR-5698 1 0 0
chr5:138163314|138164350 hsa-miR-6069 1 0 0
chr5:138163314|138164350 hsa-miR-6085 1 0 0
chr5:138163314|138164350 hsa-miR-6125 1 0 0
chr5:138163314|138164350 hsa-miR-6132 1 0 0
chr5:138163314|138164350 hsa-miR-6133 1 0 0
chr5:138163314|138164350 hsa-miR-6745 1 0 0
chr5:138163314|138164350 hsa-miR-12114 1 0 0
chr5:138163314|138164350 hsa-miR-12118 1 1 0
chr5:138163314|138164350 hsa-miR-12119 1 1 0
chr5:138163314|138164350 hsa-miR-12128 1 0 0
chr5:138163314|138164350 hsa-miR-211-3p 1 0 0
chr5:138163314|138164350 hsa-miR-4433b-3p 1 0 0
chr5:138163314|138164350 hsa-miR-6734-5p 1 1 0
chr5:138163314|138164350 hsa-miR-1273h-3p 0 1 0
chr5:138163314|138164350 hsa-miR-6747-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6825-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6894-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6857-5p 1 0 0
chr5:138163314|138164350 hsa-miR-4687-3p 1 0 0
chr5:138163314|138164350 hsa-miR-6799-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6510-5p 1 0 0
chr5:138163314|138164350 hsa-miR-3192-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6757-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6880-5p 1 0 0
chr5:138163314|138164350 hsa-miR-7847-3p 1 0 0
chr5:138163314|138164350 hsa-miR-4695-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6890-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6806-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6759-5p 1 1 0
chr5:138163314|138164350 hsa-miR-6721-5p 1 0 0
chr5:138163314|138164350 hsa-miR-197-5p 1 0 0
chr5:138163314|138164350 hsa-miR-3605-5p 0 1 0
chr5:138163314|138164350 hsa-miR-6716-5p 1 0 0
chr5:138163314|138164350 hsa-miR-659-3p 1 0 0
chr5:138163314|138164350 hsa-miR-6793-5p 1 1 0
chr5:138163314|138164350 hsa-miR-6796-5p 1 0 0
chr5:138163314|138164350 hsa-miR-4697-3p 1 0 0
chr5:138163314|138164350 hsa-miR-6732-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6805-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6798-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6881-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6782-5p 1 0 0
chr5:138163314|138164350 hsa-miR-1226-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6853-5p 1 0 0
chr5:138163314|138164350 hsa-miR-193b-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6784-5p 1 0 0
chr5:138163314|138164350 hsa-miR-1908-5p 1 0 0
chr5:138163314|138164350 hsa-miR-4650-3p 0 1 0
chr5:138163314|138164350 hsa-miR-6771-5p 1 0 0
chr5:138163314|138164350 hsa-miR-4732-5p 1 1 0
chr5:138163314|138164350 hsa-miR-3202 1 1 0
chr5:138163314|138164350 hsa-miR-6834-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6830-3p 0 1 0
chr5:138163314|138164350 hsa-miR-149-3p 1 0 0
chr5:138163314|138164350 hsa-miR-937-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6824-5p 1 1 0
chr5:138163314|138164350 hsa-miR-3162-5p 1 1 0
chr5:138163314|138164350 hsa-miR-6886-5p 1 1 0
chr5:138163314|138164350 hsa-miR-5010-5p 1 0 0
chr5:138163314|138164350 hsa-miR-7162-3p 1 0 0
chr5:138163314|138164350 hsa-miR-7112-5p 1 0 0
chr5:138163314|138164350 hsa-miR-664b-5p 1 0 0
chr5:138163314|138164350 hsa-miR-1225-5p 1 0 0
chr5:138163314|138164350 hsa-let-7a-5p 0 1 0
chr5:138163314|138164350 hsa-miR-4773 1 1 0
chr5:138163314|138164350 hsa-miR-5002-5p 1 0 0
chr5:138163314|138164350 hsa-miR-1207-5p 1 0 0
chr5:138163314|138164350 hsa-miR-3689b-3p 1 0 0
chr5:138163314|138164350 hsa-miR-4763-3p 1 0 0
chr5:138163314|138164350 hsa-miR-6778-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6787-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6816-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6870-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6893-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6775-5p 1 0 0
chr5:138163314|138164350 hsa-miR-1343-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6726-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6743-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6752-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6754-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6756-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6769a-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6813-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6851-5p 1 0 0
chr5:138163314|138164350 hsa-miR-7110-5p 1 0 0
chr5:138163314|138164350 hsa-miR-11181-3p 1 0 0
chr5:138163314|138164350 hsa-miR-6722-3p 1 1 0
chr5:138163314|138164350 hsa-miR-6763-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6779-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6780a-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6797-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6808-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6879-5p 1 0 0
chr5:138163314|138164350 hsa-miR-7111-5p 1 0 0
chr5:138163314|138164350 hsa-miR-3620-5p 1 0 0
chr5:138163314|138164350 hsa-miR-4728-5p 1 0 0
chr5:138163314|138164350 hsa-miR-5196-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6780b-5p 1 1 0
chr5:138163314|138164350 hsa-miR-10526-3p 1 1 0
chr5:138163314|138164350 hsa-miR-1909-3p 1 0 0
chr5:138163314|138164350 hsa-miR-4632-5p 1 0 0
chr5:138163314|138164350 hsa-miR-4649-5p 1 0 0
chr5:138163314|138164350 hsa-miR-4725-3p 1 1 0
chr5:138163314|138164350 hsa-miR-4749-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6729-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6738-5p 1 1 0
chr5:138163314|138164350 hsa-miR-6794-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6846-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6848-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6858-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6883-5p 1 0 0
chr5:138163314|138164350 hsa-miR-4436b-3p 1 0 0
chr5:138163314|138164350 hsa-miR-6831-5p 1 0 0
chr5:138163314|138164350 hsa-miR-939-5p 1 0 0
chr5:138163314|138164350 hsa-miR-3199 1 0 0
chr5:138163314|138164350 hsa-miR-4769-5p 1 0 0
chr5:138163314|138164350 hsa-miR-365a-5p 1 0 0
chr5:138163314|138164350 hsa-miR-3940-5p 1 1 0
chr5:138163314|138164350 hsa-miR-6731-5p 1 1 0
chr5:138163314|138164350 hsa-miR-6758-5p 1 0 0
chr5:138163314|138164350 hsa-miR-1914-3p 1 0 0
chr5:138163314|138164350 hsa-miR-4646-5p 1 0 0
chr5:138163314|138164350 hsa-miR-4747-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6876-5p 1 1 0
chr5:138163314|138164350 hsa-miR-6891-5p 1 0 0
chr5:138163314|138164350 hsa-miR-4716-3p 1 1 0
chr5:138163314|138164350 hsa-miR-6785-5p 1 0 0
chr5:138163314|138164350 hsa-miR-4756-5p 1 0 0
chr5:138163314|138164350 hsa-miR-6500-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr5:138163314|138164350
ORF Type ORF1
Protein Length 79
Nucleotide Length 237
Protein Sequence MILLSMSLQRRERLPEDFSTLAFPFLWTIIPCSSPLHADLFYLLYLPTTHNPSEAKANDFKSVKEDFIYLTFQTCAESL
Nucleotide Sequence CTGATTCTTCTTTCAATGAGTCTGCAGAGGAGAGAAAGACTACCTGAAGATTTTTCCACCTTAGCCTTCCCCTTCCTATGGACCATAATCCCCTGCAGCTCTCCTTTACATGCTGACCTGTTCTACCTCCTCTACTTGCCCACAACCCACAACCCCTCAGAAGCCAAAGCAAATGATTTCAAGTCAGTGAAAGAGGACTTTATTTACCTGACATTTCAAACTTGTGCTGAGTCTCTG
CircID chr5:138163314|138164350
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MLTCSTSSTCPQPTTPQKPKQMISSQ
Nucleotide Sequence ATGCTGACCTGTTCTACCTCCTCTACTTGCCCACAACCCACAACCCCTCAGAAGCCAAAGCAAATGATTTCAAGTCAGTGA
CircID chr5:138163314|138164350
ORF Type ORF3
Protein Length 76
Nucleotide Length 228
Protein Sequence MLWLLRGCGLWASRGGRTGQHVKESCRGLWSIGRGRLRWKNLQVVFLSSADSLKEESGTIFGSQIKDAPGEDEEED
Nucleotide Sequence TTGCTTTGGCTTCTGAGGGGTTGTGGGTTGTGGGCAAGTAGAGGAGGTAGAACAGGTCAGCATGTAAAGGAGAGCTGCAGGGGATTATGGTCCATAGGAAGGGGAAGGCTAAGGTGGAAAAATCTTCAGGTAGTCTTTCTCTCCTCTGCAGACTCATTGAAAGAAGAATCAGGGACTATTTTTGGAAGCCAGATAAAGGATGCCCCAGGTGAGGATGAGGAGGAAGAT
CircID chr5:138163314|138164350
ORF Type ORF4
Protein Length 45
Nucleotide Length 138
Protein Sequence MQGIMVHRKGKAKVEKSSGSLSLLCRLIERRIRDYFWKPDKGCPR
Nucleotide Sequence CTGCAGGGGATTATGGTCCATAGGAAGGGGAAGGCTAAGGTGGAAAAATCTTCAGGTAGTCTTTCTCTCCTCTGCAGACTCATTGAAAGAAGAATCAGGGACTATTTTTGGAAGCCAGATAAAGGATGCCCCAGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab