CircRNA Information

General Information
circRNA Basic Information
CircID chr5:138556774|138557433
Strand -
CircType exon
Host Gene ENSG00000113013.11;
Algorism CIRI2;
Sequence CTCATCAGCAGGTAATTGGTCCTTGAATTCTTCCATCTTGGTTTCTGTGTCGTGAATGATTCCTTCAGCCATATTAACTGCTTCAACTCGTTCCTTCTTTCGCCGGTCTTCTTCAGCATATTTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:138556774|138557433 hsa-miR-370-5p 0 0 1
chr5:138556774|138557433 hsa-miR-370-3p 0 0 1
chr5:138556774|138557433 hsa-miR-135b-5p 0 0 1
chr5:138556774|138557433 hsa-miR-135b-3p 0 0 1
chr5:138556774|138557433 hsa-miR-889-5p 0 0 1
chr5:138556774|138557433 hsa-miR-889-3p 0 0 1
chr5:138556774|138557433 hsa-miR-1252-5p 0 0 1
chr5:138556774|138557433 hsa-miR-1252-3p 0 0 1
chr5:138556774|138557433 hsa-miR-127-5p 0 0 1
chr5:138556774|138557433 hsa-miR-7 0 0 1
chr5:138556774|138557433 hsa-miR-135a 0 0 1
chr5:138556774|138557433 hsa-miR-219-1-3p 0 0 1
chr5:138556774|138557433 hsa-miR-3125 1 0 0
chr5:138556774|138557433 hsa-miR-3154 1 1 0
chr5:138556774|138557433 hsa-miR-3185 1 1 0
chr5:138556774|138557433 hsa-miR-4428 1 0 0
chr5:138556774|138557433 hsa-miR-4430 1 0 0
chr5:138556774|138557433 hsa-miR-3135b 1 0 0
chr5:138556774|138557433 hsa-miR-4462 1 0 0
chr5:138556774|138557433 hsa-miR-4476 1 0 0
chr5:138556774|138557433 hsa-miR-4751 1 0 0
chr5:138556774|138557433 hsa-miR-5703 1 0 0
chr5:138556774|138557433 hsa-miR-5739 1 0 0
chr5:138556774|138557433 hsa-miR-6076 1 0 0
chr5:138556774|138557433 hsa-miR-6079 1 0 0
chr5:138556774|138557433 hsa-miR-6126 1 0 0
chr5:138556774|138557433 hsa-miR-8065 1 0 0
chr5:138556774|138557433 hsa-miR-12118 1 0 0
chr5:138556774|138557433 hsa-miR-12120 0 1 0
chr5:138556774|138557433 hsa-miR-4786-5p 0 1 0
chr5:138556774|138557433 hsa-miR-6730-5p 1 0 0
chr5:138556774|138557433 hsa-miR-7160-5p 1 0 0
chr5:138556774|138557433 hsa-miR-4655-5p 1 0 0
chr5:138556774|138557433 hsa-miR-1292-5p 1 1 0
chr5:138556774|138557433 hsa-miR-3616-3p 1 0 0
chr5:138556774|138557433 hsa-miR-4800-5p 1 0 0
chr5:138556774|138557433 hsa-miR-3619-3p 1 0 0
chr5:138556774|138557433 hsa-miR-29c-5p 0 1 0
chr5:138556774|138557433 hsa-miR-382-3p 0 1 0
chr5:138556774|138557433 hsa-miR-6822-5p 1 1 0
chr5:138556774|138557433 hsa-miR-3617-5p 1 0 0
chr5:138556774|138557433 hsa-miR-520e-5p 0 1 0
chr5:138556774|138557433 hsa-miR-561-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr5:138556774|138557433
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MVLEFFHLGFCVVNDSFSHINCFNSFLLSPVFFSIF
Nucleotide Sequence TTGGTCCTTGAATTCTTCCATCTTGGTTTCTGTGTCGTGAATGATTCCTTCAGCCATATTAACTGCTTCAACTCGTTCCTTCTTTCGCCGGTCTTCTTCAGCATATTT

CircID chr5:138556774|138557433
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MLKKTGERRNELKQLIWLKESFTTQKPRWKNSRTNYLLM
Nucleotide Sequence ATGCTGAAGAAGACCGGCGAAAGAAGGAACGAGTTGAAGCAGTTAATATGGCTGAAGGAATCATTCACGACACAGAAACCAAGATGGAAGAATTCAAGGACCAATTACCTGCTGATG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites