CircRNA Information

General Information
circRNA Basic Information
CircID chr5:138566655|138567042
Strand +
CircType exon
Host Gene ENSG00000113013.11;
Algorism CIRI2;
Sequence CAGGCCTTGCTACGGCACATTGTGAAGGAGTTCAAGAGAGAGGTGAGTTACCAATGTGGTTAATATGTAGACGTTGGGATATTGAGAAATTCTTTGTTCAGATTGCTCTTTGCTTTGTTTACGAGTTCAGTTCAACCCCCTTATTCTAGACACAGATACTCTTTTCAGAATATTTTTTTTCCCTACACATTAAGGGTAATAAAAAGTAATTCATGCTTATATATAAAGGTATGACTCCATTTTGTGTTGTTCCACCTTATTACTGCAGTTTATTTATCACCTCACTAATGCTGGTGTTTGGTGTTCAATGTCTTCACTTTATAGACAGGGGTTGATTTGACTAAAGACAACATGGCACTTCAGAGGGTACGGGAAGCTGCTGAAAAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:138566655|138567042 hsa-miR-17-5p 0 0 1
chr5:138566655|138567042 hsa-miR-17-3p 0 0 1
chr5:138566655|138567042 hsa-miR-18a-5p 0 0 1
chr5:138566655|138567042 hsa-miR-18a-3p 0 0 1
chr5:138566655|138567042 hsa-miR-20a-5p 0 0 1
chr5:138566655|138567042 hsa-miR-20a-3p 0 0 1
chr5:138566655|138567042 hsa-miR-30a-5p 0 0 1
chr5:138566655|138567042 hsa-miR-30a-3p 0 0 1
chr5:138566655|138567042 hsa-miR-93-5p 0 0 1
chr5:138566655|138567042 hsa-miR-93-3p 0 0 1
chr5:138566655|138567042 hsa-miR-106a-5p 0 0 1
chr5:138566655|138567042 hsa-miR-106a-3p 0 0 1
chr5:138566655|138567042 hsa-miR-30d-5p 0 0 1
chr5:138566655|138567042 hsa-miR-30d-3p 0 0 1
chr5:138566655|138567042 hsa-miR-205-5p 0 0 1
chr5:138566655|138567042 hsa-miR-205-3p 0 0 1
chr5:138566655|138567042 hsa-miR-214-5p 0 0 1
chr5:138566655|138567042 hsa-miR-214-3p 0 0 1
chr5:138566655|138567042 hsa-miR-30b-5p 0 0 1
chr5:138566655|138567042 hsa-miR-30b-3p 0 0 1
chr5:138566655|138567042 hsa-miR-186-5p 0 0 1
chr5:138566655|138567042 hsa-miR-186-3p 0 0 1
chr5:138566655|138567042 hsa-miR-106b-5p 0 0 1
chr5:138566655|138567042 hsa-miR-106b-3p 0 0 1
chr5:138566655|138567042 hsa-miR-30e-5p 0 0 1
chr5:138566655|138567042 hsa-miR-30e-3p 0 0 1
chr5:138566655|138567042 hsa-miR-340-5p 0 0 1
chr5:138566655|138567042 hsa-miR-340-3p 0 0 1
chr5:138566655|138567042 hsa-miR-18b-5p 0 0 1
chr5:138566655|138567042 hsa-miR-18b-3p 0 0 1
chr5:138566655|138567042 hsa-miR-20b-5p 0 0 1
chr5:138566655|138567042 hsa-miR-20b-3p 0 0 1
chr5:138566655|138567042 hsa-miR-410-5p 0 0 1
chr5:138566655|138567042 hsa-miR-410-3p 0 0 1
chr5:138566655|138567042 hsa-miR-511-5p 0 0 1
chr5:138566655|138567042 hsa-miR-511-3p 0 0 1
chr5:138566655|138567042 hsa-miR-519d-5p 0 0 1
chr5:138566655|138567042 hsa-miR-519d-3p 0 0 1
chr5:138566655|138567042 hsa-miR-573 0 1 1
chr5:138566655|138567042 hsa-miR-634 0 0 1
chr5:138566655|138567042 hsa-miR-641 0 1 1
chr5:138566655|138567042 hsa-miR-646 1 0 1
chr5:138566655|138567042 hsa-miR-921 0 0 1
chr5:138566655|138567042 hsa-miR-922 0 0 1
chr5:138566655|138567042 hsa-miR-1226-5p 0 0 1
chr5:138566655|138567042 hsa-miR-1226-3p 0 0 1
chr5:138566655|138567042 hsa-miR-1294 0 0 1
chr5:138566655|138567042 hsa-miR-548g-5p 0 0 1
chr5:138566655|138567042 hsa-miR-548g-3p 0 0 1
chr5:138566655|138567042 hsa-miR-1276 0 0 1
chr5:138566655|138567042 hsa-miR-513b-5p 0 0 1
chr5:138566655|138567042 hsa-miR-513b-3p 0 0 1
chr5:138566655|138567042 hsa-miR-513c-5p 0 0 1
chr5:138566655|138567042 hsa-miR-513c-3p 0 0 1
chr5:138566655|138567042 hsa-miR-142-5p 0 0 1
chr5:138566655|138567042 hsa-miR-339-5p 0 0 1
chr5:138566655|138567042 hsa-miR-1289 0 0 1
chr5:138566655|138567042 hsa-miR-330-3p 0 0 1
chr5:138566655|138567042 hsa-miR-455-5p 0 0 1
chr5:138566655|138567042 hsa-miR-338-3p 0 1 1
chr5:138566655|138567042 hsa-miR-509-3-5p 0 0 1
chr5:138566655|138567042 hsa-miR-509-5p 0 0 1
chr5:138566655|138567042 hsa-miR-556-3p 0 0 1
chr5:138566655|138567042 hsa-miR-30c 0 0 1
chr5:138566655|138567042 hsa-miR-768-3p 0 0 1
chr5:138566655|138567042 hsa-miR-595 1 0 0
chr5:138566655|138567042 hsa-miR-657 1 0 0
chr5:138566655|138567042 hsa-miR-1183 1 0 0
chr5:138566655|138567042 hsa-miR-1299 1 0 0
chr5:138566655|138567042 hsa-miR-3183 0 1 0
chr5:138566655|138567042 hsa-miR-4421 0 1 0
chr5:138566655|138567042 hsa-miR-4539 1 0 0
chr5:138566655|138567042 hsa-miR-4739 1 0 0
chr5:138566655|138567042 hsa-miR-146a-3p 0 1 0
chr5:138566655|138567042 hsa-miR-6734-5p 1 0 0
chr5:138566655|138567042 hsa-miR-4665-3p 1 0 0
chr5:138566655|138567042 hsa-miR-6762-3p 1 0 0
chr5:138566655|138567042 hsa-miR-6873-3p 0 1 0
chr5:138566655|138567042 hsa-miR-6742-5p 1 0 0
chr5:138566655|138567042 hsa-miR-6798-5p 0 1 0
chr5:138566655|138567042 hsa-miR-6835-5p 1 0 0
chr5:138566655|138567042 hsa-miR-6516-5p 1 1 0
chr5:138566655|138567042 hsa-miR-5010-5p 1 0 0
chr5:138566655|138567042 hsa-miR-7162-3p 1 0 0
chr5:138566655|138567042 hsa-miR-4520-2-3p 0 1 0
chr5:138566655|138567042 hsa-miR-6750-3p 1 1 0
chr5:138566655|138567042 hsa-miR-6812-5p 1 0 0
chr5:138566655|138567042 hsa-miR-5001-5p 1 0 0
chr5:138566655|138567042 hsa-miR-6752-5p 1 0 0
chr5:138566655|138567042 hsa-miR-6815-5p 1 0 0
chr5:138566655|138567042 hsa-miR-7110-5p 1 0 0
chr5:138566655|138567042 hsa-miR-10526-3p 1 0 0
chr5:138566655|138567042 hsa-miR-6846-5p 1 0 0
chr5:138566655|138567042 hsa-miR-6862-3p 1 0 0
chr5:138566655|138567042 hsa-miR-4723-3p 0 1 0
chr5:138566655|138567042 hsa-miR-10394-5p 1 0 0
chr5:138566655|138567042 hsa-miR-6771-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:138566655|138567042
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MRNSLFRLLFALFTSSVQPPYSRHRYSFQNIFFPYTLRVIKSNSCLYIKV
Nucleotide Sequence TTGAGAAATTCTTTGTTCAGATTGCTCTTTGCTTTGTTTACGAGTTCAGTTCAACCCCCTTATTCTAGACACAGATACTCTTTTCAGAATATTTTTTTTCCCTACACATTAAGGGTAATAAAAAGTAATTCATGCTTATATATAAAGGTATGA
CircID chr5:138566655|138567042
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MLCLRVQFNPLILDTDTLFRIFFFPTH
Nucleotide Sequence TTGCTTTGTTTACGAGTTCAGTTCAACCCCCTTATTCTAGACACAGATACTCTTTTCAGAATATTTTTTTTCCCTACACATTAA
CircID chr5:138566655|138567042
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MCCSTLLLQFIYHLTNAGVWCSMSSLYRQGLI
Nucleotide Sequence TTGTGTTGTTCCACCTTATTACTGCAGTTTATTTATCACCTCACTAATGCTGGTGTTTGGTGTTCAATGTCTTCACTTTATAGACAGGGGTTGATTTGA
CircID chr5:138566655|138567042
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MWLICRRWDIEKFFVQIALCFVYEFSSTPLF
Nucleotide Sequence ATGTGGTTAATATGTAGACGTTGGGATATTGAGAAATTCTTTGTTCAGATTGCTCTTTGCTTTGTTTACGAGTTCAGTTCAACCCCCTTATTCTAG
CircID chr5:138566655|138567042
ORF Type ORF5
Protein Length 40
Nucleotide Length 123
Protein Sequence MLIYKGMTPFCVVPPYYCSLFITSLMLVFGVQCLHFIDRG
Nucleotide Sequence ATGCTTATATATAAAGGTATGACTCCATTTTGTGTTGTTCCACCTTATTACTGCAGTTTATTTATCACCTCACTAATGCTGGTGTTTGGTGTTCAATGTCTTCACTTTATAGACAGGGGTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab