CircRNA Information

General Information
circRNA Basic Information
CircID chr5:139026801|139042643
Strand -
CircType exon
Host Gene ENSG00000120725.11;
Algorism CIRI2;
Sequence CTGATGGACATAATATTCAAGATCAAAGAGCGCAGCAATCTTCTCTTCCAAACTGGAGCTGGAACTATTGAACTTGTTGATCAGCCGTACCATGATCTGCATGTCAGTCTCAATGACAACATTCAGCTCATCAAAGTCTTTCTTCAGTTCCTCAATGGGGCGGAAGAGCCGCTTTACCTCAGCCTGCCTTGCCTTGTCTTCCTTTGAACTCTCCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:139026801|139042643 hsa-let-7b-5p 0 0 1
chr5:139026801|139042643 hsa-let-7b-3p 0 0 1
chr5:139026801|139042643 hsa-let-7c-5p 0 0 1
chr5:139026801|139042643 hsa-let-7c-3p 0 0 1
chr5:139026801|139042643 hsa-let-7d-5p 0 0 1
chr5:139026801|139042643 hsa-let-7d-3p 0 0 1
chr5:139026801|139042643 hsa-let-7e-5p 0 0 1
chr5:139026801|139042643 hsa-let-7e-3p 0 0 1
chr5:139026801|139042643 hsa-miR-98-5p 0 0 1
chr5:139026801|139042643 hsa-miR-98-3p 0 0 1
chr5:139026801|139042643 hsa-let-7g-5p 0 0 1
chr5:139026801|139042643 hsa-let-7g-3p 0 0 1
chr5:139026801|139042643 hsa-let-7i-5p 0 0 1
chr5:139026801|139042643 hsa-let-7i-3p 0 0 1
chr5:139026801|139042643 hsa-miR-185-5p 0 0 1
chr5:139026801|139042643 hsa-miR-185-3p 0 0 1
chr5:139026801|139042643 hsa-miR-202-5p 0 0 1
chr5:139026801|139042643 hsa-miR-202-3p 0 0 1
chr5:139026801|139042643 hsa-miR-518f-5p 0 0 1
chr5:139026801|139042643 hsa-miR-518f-3p 0 0 1
chr5:139026801|139042643 hsa-miR-518b 0 0 1
chr5:139026801|139042643 hsa-miR-518c-5p 0 0 1
chr5:139026801|139042643 hsa-miR-518c-3p 0 0 1
chr5:139026801|139042643 hsa-miR-558 0 0 1
chr5:139026801|139042643 hsa-miR-616-5p 0 0 1
chr5:139026801|139042643 hsa-miR-616-3p 0 0 1
chr5:139026801|139042643 hsa-miR-656-5p 0 0 1
chr5:139026801|139042643 hsa-miR-656-3p 0 0 1
chr5:139026801|139042643 hsa-miR-940 1 0 1
chr5:139026801|139042643 hsa-miR-1236-5p 0 0 1
chr5:139026801|139042643 hsa-miR-1236-3p 0 0 1
chr5:139026801|139042643 hsa-miR-1253 0 0 1
chr5:139026801|139042643 hsa-miR-145-5p 0 0 1
chr5:139026801|139042643 hsa-miR-1224-5p 0 0 1
chr5:139026801|139042643 hsa-miR-556-5p 0 0 1
chr5:139026801|139042643 hsa-miR-409-3p 0 0 1
chr5:139026801|139042643 hsa-miR-518a-3p 0 0 1
chr5:139026801|139042643 hsa-miR-518d-3p 0 0 1
chr5:139026801|139042643 hsa-miR-7 0 0 1
chr5:139026801|139042643 hsa-let-7a 0 0 1
chr5:139026801|139042643 hsa-let-7f 0 0 1
chr5:139026801|139042643 hsa-miR-1826 0 0 1
chr5:139026801|139042643 hsa-miR-612 1 0 0
chr5:139026801|139042643 hsa-miR-765 1 0 0
chr5:139026801|139042643 hsa-miR-1202 1 0 0
chr5:139026801|139042643 hsa-miR-1270 1 0 0
chr5:139026801|139042643 hsa-miR-718 0 1 0
chr5:139026801|139042643 hsa-miR-4306 1 0 0
chr5:139026801|139042643 hsa-miR-3714 1 0 0
chr5:139026801|139042643 hsa-miR-3916 1 1 0
chr5:139026801|139042643 hsa-miR-4471 0 1 0
chr5:139026801|139042643 hsa-miR-4476 1 0 0
chr5:139026801|139042643 hsa-miR-4478 0 1 0
chr5:139026801|139042643 hsa-miR-4484 1 0 0
chr5:139026801|139042643 hsa-miR-4644 1 0 0
chr5:139026801|139042643 hsa-miR-4656 1 1 0
chr5:139026801|139042643 hsa-miR-5192 1 0 0
chr5:139026801|139042643 hsa-miR-5694 0 1 0
chr5:139026801|139042643 hsa-miR-5698 1 0 0
chr5:139026801|139042643 hsa-miR-6125 1 0 0
chr5:139026801|139042643 hsa-miR-6860 1 0 0
chr5:139026801|139042643 hsa-miR-8052 1 0 0
chr5:139026801|139042643 hsa-miR-8085 0 1 0
chr5:139026801|139042643 hsa-miR-12120 1 0 0
chr5:139026801|139042643 hsa-miR-504-3p 1 0 0
chr5:139026801|139042643 hsa-miR-6809-5p 0 1 0
chr5:139026801|139042643 hsa-miR-3150a-3p 1 0 0
chr5:139026801|139042643 hsa-miR-6825-5p 1 0 0
chr5:139026801|139042643 hsa-miR-6857-5p 1 0 0
chr5:139026801|139042643 hsa-miR-1972 1 0 0
chr5:139026801|139042643 hsa-miR-3622a-5p 1 0 0
chr5:139026801|139042643 hsa-miR-6515-5p 1 1 0
chr5:139026801|139042643 hsa-miR-6089 1 0 0
chr5:139026801|139042643 hsa-miR-191-3p 0 1 0
chr5:139026801|139042643 hsa-miR-3189-5p 0 1 0
chr5:139026801|139042643 hsa-miR-6793-5p 1 0 0
chr5:139026801|139042643 hsa-miR-3944-3p 1 0 0
chr5:139026801|139042643 hsa-miR-3162-5p 1 0 0
chr5:139026801|139042643 hsa-miR-7162-3p 0 1 0
chr5:139026801|139042643 hsa-miR-873-3p 0 1 0
chr5:139026801|139042643 hsa-miR-1288-5p 0 1 0
chr5:139026801|139042643 hsa-miR-6741-3p 0 1 0
chr5:139026801|139042643 hsa-miR-5004-5p 0 1 0
chr5:139026801|139042643 hsa-miR-4699-5p 0 1 0
chr5:139026801|139042643 hsa-miR-1207-5p 1 1 0
chr5:139026801|139042643 hsa-miR-4763-3p 1 0 0
chr5:139026801|139042643 hsa-miR-6787-5p 1 0 0
chr5:139026801|139042643 hsa-miR-6893-5p 1 1 0
chr5:139026801|139042643 hsa-miR-6763-5p 1 0 0
chr5:139026801|139042643 hsa-miR-6808-5p 1 1 0
chr5:139026801|139042643 hsa-miR-6780b-5p 1 0 0
chr5:139026801|139042643 hsa-miR-6836-5p 1 0 0
chr5:139026801|139042643 hsa-miR-449c-5p 1 0 0
chr5:139026801|139042643 hsa-miR-4632-5p 1 0 0
chr5:139026801|139042643 hsa-miR-6777-5p 1 0 0
chr5:139026801|139042643 hsa-miR-6883-5p 1 0 0
chr5:139026801|139042643 hsa-miR-6889-5p 1 0 0
chr5:139026801|139042643 hsa-miR-939-5p 1 0 0
chr5:139026801|139042643 hsa-miR-3173-3p 1 1 0
chr5:139026801|139042643 hsa-miR-6529-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:139026801|139042643
ORF Type ORF1
Protein Length 68
Nucleotide Length 207
Protein Sequence LMDIIFKIKERSNLLFQTGAGTIELVDQPYHDLHVSLNDNIQLIKVFLQFLNGAEEPLYLSLPCLVFL
Nucleotide Sequence CTGATGGACATAATATTCAAGATCAAAGAGCGCAGCAATCTTCTCTTCCAAACTGGAGCTGGAACTATTGAACTTGTTGATCAGCCGTACCATGATCTGCATGTCAGTCTCAATGACAACATTCAGCTCATCAAAGTCTTTCTTCAGTTCCTCAATGGGGCGGAAGAGCCGCTTTACCTCAGCCTGCCTTGCCTTGTCTTCCTTTGA
CircID chr5:139026801|139042643
ORF Type ORF2
Protein Length 54
Nucleotide Length 162
Protein Sequence MELELLNLLISRTMICMSVSMTTFSSSKSFFSSSMGRKSRFTSACLALSSFELS
Nucleotide Sequence CTGGAGCTGGAACTATTGAACTTGTTGATCAGCCGTACCATGATCTGCATGTCAGTCTCAATGACAACATTCAGCTCATCAAAGTCTTTCTTCAGTTCCTCAATGGGGCGGAAGAGCCGCTTTACCTCAGCCTGCCTTGCCTTGTCTTCCTTTGAACTCTCC
CircID chr5:139026801|139042643
ORF Type ORF3
Protein Length 72
Nucleotide Length 216
Protein Sequence MESSKEDKARQAEVKRLFRPIEELKKDFDELNVVIETDMQIMVRLINKFNSSSSSLEEKIAALFDLEYYVHQ
Nucleotide Sequence ATGGAGAGTTCAAAGGAAGACAAGGCAAGGCAGGCTGAGGTAAAGCGGCTCTTCCGCCCCATTGAGGAACTGAAGAAAGACTTTGATGAGCTGAATGTTGTCATTGAGACTGACATGCAGATCATGGTACGGCTGATCAACAAGTTCAATAGTTCCAGCTCCAGTTTGGAAGAGAAGATTGCTGCGCTCTTTGATCTTGAATATTATGTCCATCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab