CircRNA Information

General Information
circRNA Basic Information
CircID chr5:140245575|140245914
Strand -
CircType exon
Host Gene ENSG00000113068.8;
Algorism CIRI2;
Sequence GGCCACTGCCTCTCTCACCCTCTGTTCCATCCCTCTGCTCAAGAAAACCAGGCTTAGCAGAGTGGGACAGACGCTTTTTATTGGTCTGGCTGGCGTGCCTAGTGGAAAGCTCAGGCAGAGCTTCCTATCTTGCCCTGGCTCCCATCTTCCCTCTCCTGGGAGTTCATCACACATCCCGAGAGGGAAGAGTGTCCTGGGCAGAGGTGGCAGGCAAAGCCGGGTAAAAACTCCAGGGCTGGGAAGCAAATGGGGCTCAGGGTGATGCAGAAAATGTGATGTTGCCAGGCCATCCAAATAAAGCATCCATCGGGGCAGAGGAGAAGCTGTTTCCCTGCAGACA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:140245575|140245914 hsa-miR-23a-5p 0 0 1
chr5:140245575|140245914 hsa-miR-23a-3p 0 0 1
chr5:140245575|140245914 hsa-miR-31-5p 0 0 1
chr5:140245575|140245914 hsa-miR-31-3p 0 0 1
chr5:140245575|140245914 hsa-miR-34a-5p 0 0 1
chr5:140245575|140245914 hsa-miR-34a-3p 0 0 1
chr5:140245575|140245914 hsa-miR-23b-5p 0 0 1
chr5:140245575|140245914 hsa-miR-23b-3p 0 0 1
chr5:140245575|140245914 hsa-miR-346 0 0 1
chr5:140245575|140245914 hsa-miR-449a 0 0 1
chr5:140245575|140245914 hsa-miR-526b-5p 0 0 1
chr5:140245575|140245914 hsa-miR-526b-3p 0 0 1
chr5:140245575|140245914 hsa-miR-578 0 0 1
chr5:140245575|140245914 hsa-miR-632 0 0 1
chr5:140245575|140245914 hsa-miR-449b-5p 0 0 1
chr5:140245575|140245914 hsa-miR-449b-3p 0 0 1
chr5:140245575|140245914 hsa-miR-665 0 1 1
chr5:140245575|140245914 hsa-miR-920 0 0 1
chr5:140245575|140245914 hsa-miR-1236-5p 0 0 1
chr5:140245575|140245914 hsa-miR-1236-3p 0 0 1
chr5:140245575|140245914 hsa-miR-1205 1 0 1
chr5:140245575|140245914 hsa-miR-1197 0 0 1
chr5:140245575|140245914 hsa-miR-1827 0 0 1
chr5:140245575|140245914 hsa-miR-1225-3p 1 1 1
chr5:140245575|140245914 hsa-miR-941 1 1 1
chr5:140245575|140245914 hsa-miR-1184 0 0 1
chr5:140245575|140245914 hsa-miR-324-3p 1 0 1
chr5:140245575|140245914 hsa-miR-125a-5p 0 1 1
chr5:140245575|140245914 hsa-miR-34c-5p 0 0 1
chr5:140245575|140245914 hsa-miR-516a-3p 0 0 1
chr5:140245575|140245914 hsa-miR-1233 0 0 1
chr5:140245575|140245914 hsa-miR-125b 0 0 1
chr5:140245575|140245914 hsa-miR-642 0 0 1
chr5:140245575|140245914 hsa-miR-544 0 0 1
chr5:140245575|140245914 hsa-miR-1201 0 0 1
chr5:140245575|140245914 hsa-miR-499-3p 0 0 1
chr5:140245575|140245914 hsa-miR-555 0 1 0
chr5:140245575|140245914 hsa-miR-596 1 0 0
chr5:140245575|140245914 hsa-miR-1200 1 0 0
chr5:140245575|140245914 hsa-miR-1204 1 0 0
chr5:140245575|140245914 hsa-miR-1913 0 1 0
chr5:140245575|140245914 hsa-miR-2861 1 0 0
chr5:140245575|140245914 hsa-miR-4298 1 1 0
chr5:140245575|140245914 hsa-miR-4308 0 1 0
chr5:140245575|140245914 hsa-miR-4292 1 0 0
chr5:140245575|140245914 hsa-miR-23c 0 1 0
chr5:140245575|140245914 hsa-miR-3921 0 1 0
chr5:140245575|140245914 hsa-miR-3943 1 0 0
chr5:140245575|140245914 hsa-miR-4428 0 1 0
chr5:140245575|140245914 hsa-miR-4468 0 1 0
chr5:140245575|140245914 hsa-miR-3972 1 0 0
chr5:140245575|140245914 hsa-miR-4647 0 1 0
chr5:140245575|140245914 hsa-miR-4663 0 1 0
chr5:140245575|140245914 hsa-miR-4739 0 1 0
chr5:140245575|140245914 hsa-miR-4780 1 0 0
chr5:140245575|140245914 hsa-miR-8073 1 1 0
chr5:140245575|140245914 hsa-miR-8085 1 0 0
chr5:140245575|140245914 hsa-miR-9500 0 1 0
chr5:140245575|140245914 hsa-miR-6840-3p 0 1 0
chr5:140245575|140245914 hsa-miR-3194-3p 0 1 0
chr5:140245575|140245914 hsa-miR-6747-3p 1 0 0
chr5:140245575|140245914 hsa-miR-3157-5p 0 1 0
chr5:140245575|140245914 hsa-miR-6894-5p 1 1 0
chr5:140245575|140245914 hsa-miR-6720-5p 1 0 0
chr5:140245575|140245914 hsa-miR-6804-5p 0 1 0
chr5:140245575|140245914 hsa-miR-3622a-5p 0 1 0
chr5:140245575|140245914 hsa-miR-6757-5p 0 1 0
chr5:140245575|140245914 hsa-miR-6873-5p 0 1 0
chr5:140245575|140245914 hsa-miR-505-5p 0 1 0
chr5:140245575|140245914 hsa-miR-3189-5p 1 1 0
chr5:140245575|140245914 hsa-miR-6871-5p 0 1 0
chr5:140245575|140245914 hsa-miR-6732-5p 1 0 0
chr5:140245575|140245914 hsa-miR-6827-5p 0 1 0
chr5:140245575|140245914 hsa-miR-6798-5p 1 1 0
chr5:140245575|140245914 hsa-miR-2467-3p 1 1 0
chr5:140245575|140245914 hsa-miR-6765-3p 1 0 0
chr5:140245575|140245914 hsa-miR-3194-5p 0 1 0
chr5:140245575|140245914 hsa-miR-95-5p 0 1 0
chr5:140245575|140245914 hsa-miR-4436b-5p 1 0 0
chr5:140245575|140245914 hsa-miR-939-3p 1 1 0
chr5:140245575|140245914 hsa-miR-6763-3p 1 0 0
chr5:140245575|140245914 hsa-miR-3186-5p 0 1 0
chr5:140245575|140245914 hsa-miR-4783-3p 1 0 0
chr5:140245575|140245914 hsa-miR-6894-3p 1 1 0
chr5:140245575|140245914 hsa-miR-4715-3p 0 1 0
chr5:140245575|140245914 hsa-miR-5001-3p 0 1 0
chr5:140245575|140245914 hsa-miR-642b-5p 0 1 0
chr5:140245575|140245914 hsa-miR-4638-3p 1 0 0
chr5:140245575|140245914 hsa-miR-6889-3p 1 0 0
chr5:140245575|140245914 hsa-miR-4758-3p 1 0 0
chr5:140245575|140245914 hsa-miR-7112-3p 1 1 0
chr5:140245575|140245914 hsa-miR-1910-5p 1 0 0
chr5:140245575|140245914 hsa-miR-5000-3p 0 1 0
chr5:140245575|140245914 hsa-miR-501-5p 1 0 0
chr5:140245575|140245914 hsa-miR-6773-3p 0 1 0
chr5:140245575|140245914 hsa-miR-6738-3p 0 1 0
chr5:140245575|140245914 hsa-miR-6777-3p 0 1 0
chr5:140245575|140245914 hsa-miR-331-3p 1 0 0
chr5:140245575|140245914 hsa-miR-3620-3p 1 1 0
chr5:140245575|140245914 hsa-miR-4433b-5p 0 1 0
chr5:140245575|140245914 hsa-miR-4704-5p 0 1 0
chr5:140245575|140245914 hsa-miR-3680-3p 1 1 0
chr5:140245575|140245914 hsa-miR-642a-5p 0 1 0
chr5:140245575|140245914 hsa-miR-221-5p 0 1 0
chr5:140245575|140245914 hsa-miR-6885-3p 0 1 0
chr5:140245575|140245914 hsa-miR-1233-5p 0 1 0
chr5:140245575|140245914 hsa-miR-6769b-5p 1 0 0
chr5:140245575|140245914 hsa-miR-6812-5p 1 0 0
chr5:140245575|140245914 hsa-miR-6752-5p 1 1 0
chr5:140245575|140245914 hsa-miR-6803-5p 1 0 0
chr5:140245575|140245914 hsa-miR-1249-5p 0 1 0
chr5:140245575|140245914 hsa-miR-6774-5p 0 1 0
chr5:140245575|140245914 hsa-miR-6797-5p 0 1 0
chr5:140245575|140245914 hsa-miR-6879-5p 0 1 0
chr5:140245575|140245914 hsa-miR-4728-5p 0 1 0
chr5:140245575|140245914 hsa-miR-4685-5p 0 1 0
chr5:140245575|140245914 hsa-miR-4726-5p 1 0 0
chr5:140245575|140245914 hsa-miR-4745-3p 1 0 0
chr5:140245575|140245914 hsa-miR-6856-5p 0 1 0
chr5:140245575|140245914 hsa-miR-1285-3p 1 0 0
chr5:140245575|140245914 hsa-miR-6750-5p 1 0 0
chr5:140245575|140245914 hsa-miR-4722-3p 0 1 0
chr5:140245575|140245914 hsa-miR-6727-3p 1 1 0
chr5:140245575|140245914 hsa-miR-6837-5p 0 1 0
chr5:140245575|140245914 hsa-miR-6775-3p 1 0 0
chr5:140245575|140245914 hsa-miR-3059-5p 1 0 0
chr5:140245575|140245914 hsa-miR-6751-3p 0 1 0
chr5:140245575|140245914 hsa-miR-6806-3p 0 1 0
chr5:140245575|140245914 hsa-miR-664b-3p 1 1 0
chr5:140245575|140245914 hsa-miR-125b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:140245575|140245914
ORF Type ORF1
Protein Length 48
Nucleotide Length 147
Protein Sequence MPWLPSSLSWEFITHPEREECPGQRWQAKPGKNSRAGKQMGLRVMQKM
Nucleotide Sequence TTGCCCTGGCTCCCATCTTCCCTCTCCTGGGAGTTCATCACACATCCCGAGAGGGAAGAGTGTCCTGGGCAGAGGTGGCAGGCAAAGCCGGGTAAAAACTCCAGGGCTGGGAAGCAAATGGGGCTCAGGGTGATGCAGAAAATGTGA
CircID chr5:140245575|140245914
ORF Type ORF2
Protein Length 75
Nucleotide Length 228
Protein Sequence MLKKTRLSRVGQTLFIGLAGVPSGKLRQSFLSCPGSHLPSPGSSSHIPRGKSVLGRGGRQSRVKTPGLGSKWGSG
Nucleotide Sequence CTGCTCAAGAAAACCAGGCTTAGCAGAGTGGGACAGACGCTTTTTATTGGTCTGGCTGGCGTGCCTAGTGGAAAGCTCAGGCAGAGCTTCCTATCTTGCCCTGGCTCCCATCTTCCCTCTCCTGGGAGTTCATCACACATCCCGAGAGGGAAGAGTGTCCTGGGCAGAGGTGGCAGGCAAAGCCGGGTAAAAACTCCAGGGCTGGGAAGCAAATGGGGCTCAGGGTGA
CircID chr5:140245575|140245914
ORF Type ORF3
Protein Length 72
Nucleotide Length 219
Protein Sequence MPLSPSVPSLCSRKPGLAEWDRRFLLVWLACLVESSGRASYLALAPIFPLLGVHHTSREGRVSWAEVAGKAG
Nucleotide Sequence CTGCCTCTCTCACCCTCTGTTCCATCCCTCTGCTCAAGAAAACCAGGCTTAGCAGAGTGGGACAGACGCTTTTTATTGGTCTGGCTGGCGTGCCTAGTGGAAAGCTCAGGCAGAGCTTCCTATCTTGCCCTGGCTCCCATCTTCCCTCTCCTGGGAGTTCATCACACATCCCGAGAGGGAAGAGTGTCCTGGGCAGAGGTGGCAGGCAAAGCCGGGTAA
CircID chr5:140245575|140245914
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence MQGNSFSSAPMDALFGWPGNITFSASP
Nucleotide Sequence CTGCAGGGAAACAGCTTCTCCTCTGCCCCGATGGATGCTTTATTTGGATGGCCTGGCAACATCACATTTTCTGCATCACCCTGA
CircID chr5:140245575|140245914
ORF Type ORF5
Protein Length 39
Nucleotide Length 117
Protein Sequence MPELSTRHASQTNKKRLSHSAKPGFLEQRDGTEGERGSG
Nucleotide Sequence CTGCCTGAGCTTTCCACTAGGCACGCCAGCCAGACCAATAAAAAGCGTCTGTCCCACTCTGCTAAGCCTGGTTTTCTTGAGCAGAGGGATGGAACAGAGGGTGAGAGAGGCAGTGGC
CircID chr5:140245575|140245914
ORF Type ORF6
Protein Length 105
Nucleotide Length 315
Protein Sequence MPRWMLYLDGLATSHFLHHPEPHLLPSPGVFTRLCLPPLPRTLFPLGMCDELPGEGRWEPGQDRKLCLSFPLGTPARPIKSVCPTLLSLVFLSRGMEQRVREAVA
Nucleotide Sequence CTGCCCCGATGGATGCTTTATTTGGATGGCCTGGCAACATCACATTTTCTGCATCACCCTGAGCCCCATTTGCTTCCCAGCCCTGGAGTTTTTACCCGGCTTTGCCTGCCACCTCTGCCCAGGACACTCTTCCCTCTCGGGATGTGTGATGAACTCCCAGGAGAGGGAAGATGGGAGCCAGGGCAAGATAGGAAGCTCTGCCTGAGCTTTCCACTAGGCACGCCAGCCAGACCAATAAAAAGCGTCTGTCCCACTCTGCTAAGCCTGGTTTTCTTGAGCAGAGGGATGGAACAGAGGGTGAGAGAGGCAGTGGCC
CircID chr5:140245575|140245914
ORF Type ORF7
Protein Length 59
Nucleotide Length 180
Protein Sequence MAWQHHIFCITLSPICFPALEFLPGFACHLCPGHSSLSGCVMNSQEREDGSQGKIGSSA
Nucleotide Sequence ATGGCCTGGCAACATCACATTTTCTGCATCACCCTGAGCCCCATTTGCTTCCCAGCCCTGGAGTTTTTACCCGGCTTTGCCTGCCACCTCTGCCCAGGACACTCTTCCCTCTCGGGATGTGTGATGAACTCCCAGGAGAGGGAAGATGGGAGCCAGGGCAAGATAGGAAGCTCTGCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab