CircRNA Information

General Information
circRNA Basic Information
CircID chr5:140436104|140436257
Strand +
CircType exon
Host Gene ENSG00000254996.5;ENSG00000131503.20;
Algorism find_circ;CIRI2;CIRC
Sequence GTTGAATCATTTATTTTGGACCAAGAAGATCTGGATAACCCAGTGCTTAAAACAACATCAGAGATATTCTTATCAAGTACTGCAGAAGGAGCAGACTTACGCACTGTGGATCCAGAGACACAGGCACGACTAGAAGCATTGCTAGAAGCAGCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:140436104|140436257 hsa-miR-15a-5p 0 0 1
chr5:140436104|140436257 hsa-miR-15a-3p 0 0 1
chr5:140436104|140436257 hsa-miR-26b-5p 0 0 1
chr5:140436104|140436257 hsa-miR-26b-3p 0 0 1
chr5:140436104|140436257 hsa-miR-217-5p 0 0 1
chr5:140436104|140436257 hsa-miR-217-3p 0 0 1
chr5:140436104|140436257 hsa-miR-15b-5p 0 0 1
chr5:140436104|140436257 hsa-miR-15b-3p 0 0 1
chr5:140436104|140436257 hsa-miR-195-5p 0 0 1
chr5:140436104|140436257 hsa-miR-195-3p 0 0 1
chr5:140436104|140436257 hsa-miR-424-5p 0 0 1
chr5:140436104|140436257 hsa-miR-424-3p 0 0 1
chr5:140436104|140436257 hsa-miR-497-5p 0 0 1
chr5:140436104|140436257 hsa-miR-497-3p 0 0 1
chr5:140436104|140436257 hsa-miR-520f-5p 0 0 1
chr5:140436104|140436257 hsa-miR-520f-3p 0 0 1
chr5:140436104|140436257 hsa-miR-298 0 1 1
chr5:140436104|140436257 hsa-miR-1297 0 0 1
chr5:140436104|140436257 hsa-miR-1261 0 0 1
chr5:140436104|140436257 hsa-miR-1278 0 0 1
chr5:140436104|140436257 hsa-miR-1825 0 0 1
chr5:140436104|140436257 hsa-miR-525-5p 0 1 1
chr5:140436104|140436257 hsa-miR-520a-5p 0 0 1
chr5:140436104|140436257 hsa-miR-509-3-5p 0 1 1
chr5:140436104|140436257 hsa-miR-509-5p 0 1 1
chr5:140436104|140436257 hsa-miR-521 0 1 1
chr5:140436104|140436257 hsa-miR-16 0 0 1
chr5:140436104|140436257 hsa-miR-26a 0 0 1
chr5:140436104|140436257 hsa-miR-4318 0 1 0
chr5:140436104|140436257 hsa-miR-3911 1 0 0
chr5:140436104|140436257 hsa-miR-4752 0 1 0
chr5:140436104|140436257 hsa-miR-5706 0 1 0
chr5:140436104|140436257 hsa-miR-3156-5p 0 1 0
chr5:140436104|140436257 hsa-miR-3691-5p 1 0 0
chr5:140436104|140436257 hsa-miR-3158-5p 0 1 0
chr5:140436104|140436257 hsa-miR-4776-5p 1 1 0
chr5:140436104|140436257 hsa-miR-106b-3p 0 1 0
chr5:140436104|140436257 hsa-miR-4529-3p 1 0 0
chr5:140436104|140436257 hsa-miR-7113-5p 1 0 0
chr5:140436104|140436257 hsa-miR-499b-5p 0 1 0
chr5:140436104|140436257 hsa-miR-4771 0 1 0
chr5:140436104|140436257 hsa-miR-199b-5p 0 1 0
chr5:140436104|140436257 hsa-miR-10398-3p 1 0 0
chr5:140436104|140436257 hsa-miR-6715b-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr5:140436104|140436257
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MLLVVPVSLDPQCVSLLLLQYLIRISLMLF*
Nucleotide Sequence ATGCTTCTAGTCGTGCCTGTGTCTCTGGATCCACAGTGCGTAAGTCTGCTCCTTCTGCAGTACTTGATAAGAATATCTCTGATGTTGTTTTAA

CircID chr5:140436104|140436257
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence LLLLAMLLVVPVSLDPQCVSLLLLQYLIRISLMLF
Nucleotide Sequence CTGCTGCTTCTAGCAATGCTTCTAGTCGTGCCTGTGTCTCTGGATCCACAGTGCGTAAGTCTGCTCCTTCTGCAGTACTTGATAAGAATATCTCTGATGTTGTTTTAA

CircID chr5:140436104|140436257
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MDQEDLDNPVLKTTSEIFLSSTAEGADLRTVDPETQARLEALLEAA
Nucleotide Sequence TTGGACCAAGAAGATCTGGATAACCCAGTGCTTAAAACAACATCAGAGATATTCTTATCAAGTACTGCAGAAGGAGCAGACTTACGCACTGTGGATCCAGAGACACAGGCACGACTAGAAGCATTGCTAGAAGCAGCA

CircID chr5:140436104|140436257
ORF Type ORF3
Protein Length 43
Nucleotide Length 132
Protein Sequence LNHLFWTKKIWITQCLKQHQRYSYQVLQKEQTYALWIQRHRHD
Nucleotide Sequence TTGAATCATTTATTTTGGACCAAGAAGATCTGGATAACCCAGTGCTTAAAACAACATCAGAGATATTCTTATCAAGTACTGCAGAAGGAGCAGACTTACGCACTGTGGATCCAGAGACACAGGCACGACTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr5:140436104|140436257 NOP56 0 2 0
chr5:140436104|140436257 MOV10 0 0 1
chr5:140436104|140436257 ELAVL1 2 6 2
chr5:140436104|140436257 FAM120A 0 0 2
chr5:140436104|140436257 UPF1 1 0 0
chr5:140436104|140436257 FMR1 2 0 7
chr5:140436104|140436257 FUS 2 1 1
chr5:140436104|140436257 SRSF1 0 0 6
chr5:140436104|140436257 NOP58 1 1 2
chr5:140436104|140436257 U2AF1 0 0 1
chr5:140436104|140436257 U2AF2 3 14 1
chr5:140436104|140436257 SRSF9 0 0 1
chr5:140436104|140436257 DDX54 0 0 6
chr5:140436104|140436257 PCBP2 1 0 0
chr5:140436104|140436257 SF3A3 1 0 0
chr5:140436104|140436257 HNRNPC 2 1 0
chr5:140436104|140436257 TRA2A 0 0 3
chr5:140436104|140436257 DHX9 0 1 0
chr5:140436104|140436257 HNRNPA1 2 0 0
chr5:140436104|140436257 LARP7 0 0 1
chr5:140436104|140436257 SMNDC1 0 0 1
chr5:140436104|140436257 ACIN1 0 0 3
chr5:140436104|140436257 LIN28B 1 0 4
chr5:140436104|140436257 RANGAP1 0 0 2
chr5:140436104|140436257 FXR1 1 0 2
chr5:140436104|140436257 FXR2 2 0 4
chr5:140436104|140436257 SND1 0 0 1
chr5:140436104|140436257 IGF2BP3 0 0 1
chr5:140436104|140436257 IGF2BP2 1 0 5
chr5:140436104|140436257 BUD13 0 0 1
chr5:140436104|140436257 RBFOX2 0 2 1
chr5:140436104|140436257 RBM47 1 0 1
chr5:140436104|140436257 CSTF2T 0 0 1
chr5:140436104|140436257 TIAL1 0 1 0
chr5:140436104|140436257 EIF4A3 2 2 2
chr5:140436104|140436257 FBL 0 1 2