CircRNA Information

General Information
circRNA Basic Information
CircID chr5:140528924|140529066
Strand -
CircType exon
Host Gene ENSG00000131503.19;
Algorism CIRI2;
Sequence CTATCACTAGCGGGCAAGCTCCCACCACATTTCTACCTGCAAGTACTTCTCAAGCACAGCTTTCTTCACAAAAGATGGAGTCTTTCTCTGCTGTGCCACCCACCAAAGAGAAAGTGTCCACACAGGACCAGCCCATGGCAAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:140528924|140529066 hsa-miR-320a-5p 0 0 1
chr5:140528924|140529066 hsa-miR-320a-3p 0 0 1
chr5:140528924|140529066 hsa-miR-580-5p 0 0 1
chr5:140528924|140529066 hsa-miR-580-3p 0 0 1
chr5:140528924|140529066 hsa-miR-636 1 0 1
chr5:140528924|140529066 hsa-miR-657 0 0 1
chr5:140528924|140529066 hsa-miR-758-5p 0 0 1
chr5:140528924|140529066 hsa-miR-758-3p 0 0 1
chr5:140528924|140529066 hsa-miR-541-5p 0 0 1
chr5:140528924|140529066 hsa-miR-541-3p 0 0 1
chr5:140528924|140529066 hsa-miR-920 0 0 1
chr5:140528924|140529066 hsa-miR-922 0 0 1
chr5:140528924|140529066 hsa-miR-1293 0 0 1
chr5:140528924|140529066 hsa-miR-1253 0 0 1
chr5:140528924|140529066 hsa-miR-654-5p 0 0 1
chr5:140528924|140529066 hsa-miR-320b 1 0 1
chr5:140528924|140529066 hsa-miR-320c 1 0 1
chr5:140528924|140529066 hsa-miR-320d 1 0 1
chr5:140528924|140529066 hsa-miR-9 0 0 1
chr5:140528924|140529066 hsa-miR-644 0 0 1
chr5:140528924|140529066 hsa-miR-1300 0 0 1
chr5:140528924|140529066 hsa-miR-218 0 0 1
chr5:140528924|140529066 hsa-miR-147 0 0 1
chr5:140528924|140529066 hsa-miR-1245 0 0 1
chr5:140528924|140529066 hsa-miR-557 1 0 0
chr5:140528924|140529066 hsa-miR-608 1 0 0
chr5:140528924|140529066 hsa-miR-548k 1 0 0
chr5:140528924|140529066 hsa-miR-548l 1 0 0
chr5:140528924|140529066 hsa-miR-3138 1 0 0
chr5:140528924|140529066 hsa-miR-4429 1 0 0
chr5:140528924|140529066 hsa-miR-4440 1 0 0
chr5:140528924|140529066 hsa-miR-4689 1 0 0
chr5:140528924|140529066 hsa-miR-4706 1 0 0
chr5:140528924|140529066 hsa-miR-4739 1 0 0
chr5:140528924|140529066 hsa-miR-4741 1 0 0
chr5:140528924|140529066 hsa-miR-548ax 1 0 0
chr5:140528924|140529066 hsa-miR-12114 1 0 0
chr5:140528924|140529066 hsa-miR-93-5p 1 0 0
chr5:140528924|140529066 hsa-miR-3622b-5p 1 0 0
chr5:140528924|140529066 hsa-miR-197-5p 1 0 0
chr5:140528924|140529066 hsa-miR-6742-5p 1 0 0
chr5:140528924|140529066 hsa-miR-6798-5p 1 0 0
chr5:140528924|140529066 hsa-miR-6770-5p 1 0 0
chr5:140528924|140529066 hsa-miR-6835-5p 1 0 0
chr5:140528924|140529066 hsa-miR-296-3p 1 0 0
chr5:140528924|140529066 hsa-let-7b-5p 1 0 0
chr5:140528924|140529066 hsa-miR-17-5p 1 0 0
chr5:140528924|140529066 hsa-miR-106a-5p 1 0 0
chr5:140528924|140529066 hsa-miR-887-5p 1 0 0
chr5:140528924|140529066 hsa-miR-20a-5p 1 0 0
chr5:140528924|140529066 hsa-miR-6769b-5p 1 0 0
chr5:140528924|140529066 hsa-miR-6787-5p 1 0 0
chr5:140528924|140529066 hsa-miR-6865-5p 1 0 0
chr5:140528924|140529066 hsa-miR-5001-5p 1 0 0
chr5:140528924|140529066 hsa-miR-6726-5p 1 0 0
chr5:140528924|140529066 hsa-miR-3620-5p 1 0 0
chr5:140528924|140529066 hsa-miR-5189-5p 1 0 0
chr5:140528924|140529066 hsa-miR-6858-5p 1 0 0
chr5:140528924|140529066 hsa-miR-6831-5p 1 0 0
chr5:140528924|140529066 hsa-miR-939-5p 1 0 0
chr5:140528924|140529066 hsa-miR-6511b-5p 1 0 0
chr5:140528924|140529066 hsa-miR-550a-5p 1 0 0
chr5:140528924|140529066 hsa-miR-20b-5p 1 0 0
chr5:140528924|140529066 hsa-miR-548av-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:140528924|140529066
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MQVLLKHSFLHKRWSLSLLCHPPKRKCPHRTSPWQ
Nucleotide Sequence CTGCAAGTACTTCTCAAGCACAGCTTTCTTCACAAAAGATGGAGTCTTTCTCTGCTGTGCCACCCACCAAAGAGAAAGTGTCCACACAGGACCAGCCCATGGCAA
CircID chr5:140528924|140529066
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MGWSCVDTFSLVGGTAEKDSIFCEESCA
Nucleotide Sequence ATGGGCTGGTCCTGTGTGGACACTTTCTCTTTGGTGGGTGGCACAGCAGAGAAAGACTCCATCTTTTGTGAAGAAAGCTGTGCTTGA
CircID chr5:140528924|140529066
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence LPWAGPVWTLSLWWVAQQRKTPSFVKKAVLEKYLQVEMWWELAR
Nucleotide Sequence TTGCCATGGGCTGGTCCTGTGTGGACACTTTCTCTTTGGTGGGTGGCACAGCAGAGAAAGACTCCATCTTTTGTGAAGAAAGCTGTGCTTGAGAAGTACTTGCAGGTAGAAATGTGGTGGGAGCTTGCCCGCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab